Gene detail

Gene detail information of Glyur001278s00025616

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G48450.1	3.00E-140	Protein of unknown function (DUF760)
NR	AFK42768.1	0	unknown [Lotus japonicus]
trEMBL	tr\|I3SR76\|I3SR76_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK42768.1}

Sequence

Transcript Sequence

>Glyur001278s00025616.1
CTGAATCTACCCGTCTCCATTCTCGCGCTCCCTCTTCCTCTCCTTCTCCTTCTAGGGTTTCTTTCTTGATTCACAGCTTCCCCTTGCTCGTTATCAATCTCTCTGTCAGGCTTCTCTTCCATAGCAGATTCAACCTCTTCTTAGTCTCACAGCTCCATATGGATGTGGCAGCGACAGCCATCCGGTCCCCGGCGACTCTGTCGATCGTCCTAGGAAGACCAAGCAACGGATCCCGCGTGGCTCGGTTTGGTACTAATTTTCGGTTCTCTGGCAACAAGCTGTGCACTTCTGTAACTTTCCCCAGGCAAGGTCATAGTCATAGTCATAGTCATAGTCATAGTCATAGTCATAGGAGACTCTCTTTTGCAAGTAGAAGAGGCTTAGTAGTCAGGGCAACATCTTCTTCGGACTCGTCTGAATCCAATGCCAAGATTGCTCCTCTTCAGTTTGAGTCCCCAGTTGGGCAGTTTCTCTCTCAGATTTTGATAAATCACCCACATCTCGTGCCTGCTGCGGTAGACCAGCAGCTTGAGCAACTCCAAACTGACCGTGATGCCGATAAACAAAGCCAAGATCCTTCTGATANGGGCACTGATTTAGTTTTGTACAGGAGAATTGCTGAGGTGAAGGCTAACGAAAGAAGGAAAGCTCTGGAAGAGATCTTGTACACATTGGTTGTGCAGAAGTTCATGGATGCTAATATTTCTTTAATACCCTCTATAACCCCTGATCCATCTGGTAGGGTTGATTCATGGCCAAAAGANGGTAAACTTGAGCAGCTTCACTCACACGAAGCATATGAGATGATCCAAAACCACTTGGCTCTCATTCTGGGTAACAGAGCTGGAGATTTAACATCCATAGCTCAAATCAGCAAACTCAGGGTAGGGCAGGTCTATGCGGCATCAGTGATGTATGGTTACTTTCTTAAGCGAGTCGACCAAAGGTTCCAACTGGAGAAGACAATGAAAATTCTTCCAAATGCAGCAGAAGAGAGTAGTGTTCATCAAACTATTGTGGACGATGAAAGACCTGGTAGTGGAGAGGACACTTCTCAAGTGATGTCTCATCCCGAAGTATCTACTTGGCCTGGTGGTGACATCAGTCCTGGTGGATTTGGCTATGGTATAAAGCCAACCAGGTTGCGTAACTATGTGATGTCCTTTGATGGTGATACCCTACAGAGATATGCAACAATAAGATCCAAAGAAGCTGTGAGCATCATTGAGAAGCACACAGAAGCATTGTTTGGAAGACCTGAAATTGTCATAACACCTGAGGGGACAATTGATTCTTCAAAGGATGAAAACATCAAAATTAGCTTTGGTGGTTTAAAGAGACTTGTTTTAGAGGCTGTGACTTTTGGTTCTTTTCTCTGGGATGTTGAGAGCTACGTGGACTCAAGGTACCATTTTGTCTTAAATTGAGCTATGAGTTATGCTTGCTCATACATCCCAAGGCATGGTTTAAGGGTGTTGGTACTGACTAATGGAATATAATTTAATGTTACTAGCTGTTAAAGGTCCAAATATTGTTCATTAATTGATCTGTATATGCCATATAGTGATAGTGACTCTGGATTTCACTAATGAAAGGAAGGTTATTTTCAAGGTAGATCCTTGCTTATTTTTNTATCCATTTTTAACCAGCAACAAATCCTTACAGATAAGGTAGCAGCTTTATCTGTGATTATCCTATTGTGTAATGCTTAGTTATTACCTCTTTCACCCATTTTCTGCGCGGGTTTGATTGCTGAATTTCGCTATTCAGGTACTGCACATATTTTATGTTGTTAGAGATTCCACGACTAGAAACATGGCAAAAGTAGTCCCCATCCTCACCCCTTGATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01278	40176	43311	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001278s00025616.1	PF05542.6	DUF760	148	271	1.20E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.626
SRR1783600	control	31.818
SRR1783602	moderate drought stress	23.856
SRR1811619	moderate drought stress	23.105

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.566
DRR006520	Root Summer glycyrrhizin high producing strain	35.877
DRR006521	Root Winter glycyrrhizin high producing strain	24.934
DRR006522	Root Winter glycyrrhizin high producing strain	23.920
DRR006523	Root Summer glycyrrhizin low producing strain	27.836
DRR006524	Root Summer glycyrrhizin low producing strain	28.292
DRR006525	Leaf Summer glycyrrhizin high producing strain	119.969
DRR006526	Leaf Summer glycyrrhizin high producing strain	119.001

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.361
SRR2868004	Drought Stress (root)	36.913
SRR2967015	Control (root)	33.627

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	131.705
SRR9715740	Leaf	220.746
SRR9715741	Leaf	129.103
SRR9715739	Root	16.279
SRR9715742	Root	29.760
SRR9715743	Root	28.700

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.484
SRR8749028	MeJA induced 9h	17.142
SRR8749029	MeJA induced 9h	15.170
SRR8749030	Uninduced	18.873
SRR8749031	Uninduced	21.576
SRR8749032	Uninduced	21.030

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.219
SRR8400027	Control - Root	38.384