Gene detail

Gene detail information of Glyur001278s00025610.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01940.1	3.00E-79	C2H2-like zinc finger protein
NR	XP_002534293.1	9.52E-102	nucleic acid binding protein, putative [Ricinus communis]
Swissprot	tr\|F4IPE3\|IDD15_ARATH	6.00E-96	Protein SHOOT GRAVITROPISM 5
trEMBL	tr\|B9T7S4\|B9T7S4_RICCO	4.00E-102	Nucleic acid binding protein, putative {ECO:0000313\|EMBL:EEF28090.1}

Sequence

Transcript Sequence

>Glyur001278s00025610.1
GAAACAGAGACCATAGTAGCAGCTAAGCTAGCTAGTAGTAATTAATAGGGATTATCCACTCATTCTCGAATTAATCCCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAATATGACGTCAGTTAATCCCACTTCTGACTGCGCTGAGCCTGAGACTAATAATAAAAGGAAGAGACGACCTGCCGGAACACCAGATCCAGATGCAGAAGTGGTGTCGCTGTCACCGAAGACGCTGNTGGAATCAGATCGTTTCGTGTGTGAAATATGCAAGCAGGGATTCCAGAGGGAGCAGAACCTGCAGATGCACCGGCGGAGGCACAGGGTGCCGTGGAAGCTGCTGAAGAGGGATCAGGAGGTGAGGAAGAGGGTGTTCGTGTGCCCGGAGGCGGGGTGTGTGCACCACCACNCATCCCACGCCCTGGGGGACCTGGTGGGGATCAAGAAGCATTTCAGGAGGAAACACAGCAACCACAGGGAATGGNTCTGCCACAGATGCTCCAAGGCCTACGCCGTGCACTCCGACTACAAAGCTCATCTCAAAACCTGTGGCACCAGAGGCCACTCCTGCGACTGTGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATTGAGCACCAAGACGCGTGCAACAAGATGGGGCGGTTAAGGCCACAGGCACAGGCAGAATTAGCATGCTTGTCCTGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGCTTCAATTTGCAGGAGCAGCCCTTCAAGCGAAACAGCGCCTACTGCAGGAGGAGGAGGTGGTCCCAGCTCAATGCTGTTTACTCAAGCTGCTGATCATCAGCCTCAAACAACGACGTCATTAATGACGACTAATATGTTGTTCCAGTTCCACCCCAACTTGGACCTCCAGCTCTCCTCCTCCACCAATATTAATATTAATCATGTCGATGATGCGGCTGCTGCAGCTAGTAATAGTAATAGTATAGCGATGGCGGAGGAGGGAAGGAAGGAAGCCAAGAGGGAGGTTGAAGTGGCAGAGCTTGAGTACGCAAATGCCATGAGGATCAGACGACTGGCTCAGGCTGAATTGGACAGAGCCTCTGCCTTCAAGGCCCATGCTCTCCAACACTNCCATTCCACCATCCTCCAAATCACTTGCCATGCTTGCAAGCACCACCCACCACTCCAATTTGGTGCTCTCACGGCCNACTCCCACTTCTACATGCCGTAGCCATCACACAAGCTGCTGCTACACAACCTGCTGCTACACAACCTTAATCACTCACATCACACACATATATCGCATCTTTCTTTTTCTATCATGCATTGCATCCTGATGAATTGAATTGGTATACGTACCAAGTGAAGTGTACGCGCGCGTTTCTATTCATCCATCAGTATGTAATTGTGGGATATATATGGATAATTAATTAACAATGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01278	8008	9762	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001278s00025610.1	PF13912.1	zf-C2H2_6	47	70	0.00026
Glyur001278s00025610.1	PF13912.1	zf-C2H2_6	153	168	0.83

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.553
SRR1783600	control	1.552
SRR1783602	moderate drought stress	3.167
SRR1811619	moderate drought stress	3.186

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.316
DRR006520	Root Summer glycyrrhizin high producing strain	2.210
DRR006521	Root Winter glycyrrhizin high producing strain	1.329
DRR006522	Root Winter glycyrrhizin high producing strain	1.792
DRR006523	Root Summer glycyrrhizin low producing strain	3.740
DRR006524	Root Summer glycyrrhizin low producing strain	3.479
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.563
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.290

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.315
SRR2868004	Drought Stress (root)	2.277
SRR2967015	Control (root)	1.670

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.065
SRR9715740	Leaf	1.111
SRR9715741	Leaf	0.771
SRR9715739	Root	0.202
SRR9715742	Root	0.313
SRR9715743	Root	0.133

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.383
SRR8749028	MeJA induced 9h	0.421
SRR8749029	MeJA induced 9h	0.345
SRR8749030	Uninduced	0.263
SRR8749031	Uninduced	0.262
SRR8749032	Uninduced	0.475

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.966
SRR8400027	Control - Root	1.783