Gene detail

Gene detail information of Glyur001277s00024306

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45960.1	2.00E-116	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	XP_004505116.1	0	PREDICTED: GDSL esterase/lipase At5g45960-like [Cicer arietinum]
COG	YP_001869007.1	2.00E-16	GDSL family lipase [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q9FJ40\|GDL86_ARATH	2.00E-143	GDSL esterase/lipase At5g45960 (Precursor)
trEMBL	tr\|A0A072UPK3\|A0A072UPK3_MEDTR	0	GDSL-like lipase/acylhydrolase {ECO:0000313\|EMBL:KEH30938.1}

Sequence

Transcript Sequence

>Glyur001277s00024306.1
AGCCCATAGTCACGTACTTTATTCTAATCACTTCCTTGTTCATTTCATGGAAACCTTTGATACGCATCGATTGCTCTCTATTAATGTGCACCTTTTGATCATGATTTGCCTGTTGTGTTTTATGGTCACAATTGAAGCTAATTCAAATGGTAAGGTCTCTGCCTTATATGTGTTTGGAGACTCCACAGTAGACCCAGGAAACAACAACTACATAAGCACACCTTTCAAGAGCAATTTTGAACCCTATGGTAGAGATTTTGCCAACCAAGTTCCCACTGGAAGGTTCACTAATGGGAAGCTTGGCACTGATTTTATTGCTTCATATGTAGGCCTGAAAGAGTTGCTGCCACCATATTTGGATCCAAATCTGAGCGATGAAGAGCTCATGACAGGAGTCAGTTTCGCCTCTGCTGGCTCTGGTTTTGACCCACTTACACCAACTCTCAGTAATGTGATTCCAGTAGCAAAGCAGTTGGAATATTTCAAAGAATGCAAGAAGAGGCTGGAGAGTAAGCTTGGTAAGCAAGGAACTGAAAATCACATGAACAACGCTGTATTTCTCATCAGCGCCGGTACAAATGACTTCGTTGTTAATTATTTCACGGTGCCAATACGAAGAAGGAGCTATAACCTCATAACCTACGGCCAGTTCTTGCGTCAACATGTAAAAGATTTCATACAGAATTTGTGGACAGAAGGTGCTCGAAAAATCGCTTTCCTTGGGCTACCTCCGATGGGATGCTTGCCGATCATGATCACCGCCAATTCCGACAATGCCTTTGTTGACCGTAATTGTGTGGACAAATATTCCGCTGTGGCAAGAGATTACAACCTCNTTCTTCAACATGAATTGTTCTTAATTCAACGGAATTTCTCTAATCCTGATGGTGCTAAGATCTCTTACATCGACATATATGGACCCTTGGCCAACATGATTCAAGGGCGTCATGAAAATCTTGGGTTTGATGAGGTTGATCGTGGGTGTTGCGGAAGTGGCTACATAGAGACAACGTTTTTGTGTAATGGGGTTTCGTATGTATGTTCCGATCCATCAAAGTATGTCTTCTGGGATTCAATACACCCTACGGAGAAGGCATACCACACCCTATTCATGGCAGCTCGTCCCAGTCTCGATGCCCTTATCAGCGGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01277	64756	67935	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001277s00024306.1	PF00657.17	Lipase_GDSL	40	357	1.60E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.875
SRR1783600	control	8.888
SRR1783602	moderate drought stress	6.030
SRR1811619	moderate drought stress	6.019

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.282
DRR006520	Root Summer glycyrrhizin high producing strain	0.212
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.080
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.080

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.270
SRR2868004	Drought Stress (root)	16.155
SRR2967015	Control (root)	13.853

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.002
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	10.291
SRR9715742	Root	1.918
SRR9715743	Root	3.293

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.123
SRR8749028	MeJA induced 9h	0.116
SRR8749029	MeJA induced 9h	0.053
SRR8749030	Uninduced	0.185
SRR8749031	Uninduced	0.066
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.430
SRR8400027	Control - Root	34.261