Gene detail information of Glyur001277s00024300 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29120.1 | 3.00E-99 | glutamate receptor 2.7 |
| NR | KEH30932.1 | 0 | glutamate receptor 3.4 [Medicago truncatula] |
| COG | YP_007133144.1 | 9.00E-17 | amino acid ABC transporter substrate-binding protein, PAAT family [Stanieria cyanosphaera PCC 7437] |
| Swissprot | tr|Q8LGN0|GLR27_ARATH | 2.00E-112 | Glutamate receptor 2.7 (Precursor) |
| trEMBL | tr|A0A072UMP3|A0A072UMP3_MEDTR | 0 | Glutamate receptor 3.4 {ECO:0000313|EMBL:KEH30932.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01277 | 32610 | 36234 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001277s00024300.1 | PF01094.23 | ANF_receptor | 67 | 372 | 7.40E-31 |
| Glyur001277s00024300.1 | PF00497.15 | SBP_bac_3 | 451 | 719 | 8.80E-16 |
| Glyur001277s00024300.1 | PF00060.21 | Lig_chan | 500 | 749 | 4.90E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.043 |
| SRR1783600 | control | 0.026 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.044 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.043 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.058 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.042 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.081 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.592 |
| SRR2868004 | Drought Stress (root) | 3.200 |
| SRR2967015 | Control (root) | 1.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.560 |
| SRR9715740 | Leaf | 0.681 |
| SRR9715741 | Leaf | 5.338 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.426 |
| SRR9715743 | Root | 0.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.372 |
| SRR8749028 | MeJA induced 9h | 0.903 |
| SRR8749029 | MeJA induced 9h | 1.361 |
| SRR8749030 | Uninduced | 10.856 |
| SRR8749031 | Uninduced | 3.758 |
| SRR8749032 | Uninduced | 1.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.899 |
| SRR8400027 | Control - Root | 1.602 |