Gene detail

Gene detail information of Glyur001277s00024297

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G28960.5	2.00E-92	nudix hydrolase homolog 15
NR	XP_003542706.1	6.12E-163	PREDICTED: nudix hydrolase 15, mitochondrial-like isoform 1 [Glycine max]
COG	YP_005029414.1	8.00E-28	NTP pyrophosphohydrolase [Dechlorosoma suillum PS]
Swissprot	tr\|Q8GYB1\|NUD15_ARATH	1.00E-123	Nudix hydrolase 15, mitochondrial (Precursor)
trEMBL	tr\|I1M039\|I1M039_SOYBN	2.00E-163	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G24060.1}

Sequence

Transcript Sequence

>Glyur001277s00024297.1
AAAAAGGCAAAAACATTTAGGAAAACATAATTGATAGGTGGGGTTGGTACTTGGTGGTTTAGTATATTATGACACATGATTTCGACTCTGAGAAGAATAACGTGGTTGTTACCCAGAGCCTCTGTCTCCAAATCCATGGATTCTTCTTCTTCCAACGTCAGCATTGGAGGATCTCAGAGGCTCCTAACGTTGGCACAACAACTTCGCCTGTACAAGCCACCGCCTTCCCCTGAAGATATCGTGGAACAGAGCATTGAAGAAAGTGGGGGCAAGGTTGTTTCCCAAGTGGGTTTTCCAGAATCAGCCACCCCAATTGCTCAAAACCCAGAAAAATTCAGACCCAAAAAAGCTGCTGTTTTGATCTGCCTCTTCGAAGGTGATGCTGGGGATCTAAGGGTCATACTCACTAAGCGCTCTTCCAAGCTATCTACTCACTCGGGTGAAGTGGCTTTGCCTGGTGGGAAAGAAGAGGAGGGGGANAAGAATGATGAGGACACTGCAAAAAGAGAGGCAATGGAGGAAATTGGGTTGGACCCTGAACTTGTCAATGTTGTTACTGTTCTTGAACCATTCTTGTCCAAGCACCTCCTAAGAGTGNTTCCTGTCATCGGCATACTTCATGACAAGAAAGCATTCAAACCTGTTCTGGATCCTGCAGAAGTGGAATCAGTATTTGATGCACCTTTGGAAATGTTTCTCAAGGATGAAAACCGGAGGCAGGAGGAGAGGGAGTGGATGGGAGAGAAGTTTTTGGTACATTTCTTTGACCATGAAATGGAGCATAAAAAATACATCATATGGGGATTGACTGCTGGGATTTTGATTAGGGCTGCATCAGTTGTGTACCAACGGCCACCGGCTTTCTTAGAGCTGAGTCCCAGATTCAAGGTTCCACAGGTTGTANCCAAGGATAGTGTATTGCCTTGAGTTCAATATCTATTGTGTTTTGTCCTTAGACCTTAATGTATGTTCTTTCCTTCATCCTACAATAATATTCATCACAACTATAGTGTTCTAGAATCCTAAGCAAGTGTTATTTACTGAAAGAAACGAAAAGGGTACTGTCCCATTACTTGGAATTCATATTCCTGCTTACCGAATACTATCATAAAATTGAGGGAGCTGCGNACGTTGAATCACTTTAGAAGGAGGAGTATCAATGAGTCCTAGTAGCATTTGCTCACTAGTGACTTGTGTTAGTTCTTTAGGTTAGTTTGGCCTTTTTAATCAATAGATGTGGACATGTGGTGATAAGTATTCTATTTAAGAATCCATNTCTTTCCTTGTTTTCAAGGATTTTATTTATTAAGTATTTGGTTTAAGGAAATTTATATTTTATTAAGATTATGTATCTAATCGGAATTTGTTAAGGATTTTTATCTTCTTTTGTTATAAAAATACTCCATGTCTTGTGTAATTTAAACTTTTGAATATTTAATAAATTGCGATTTTTGCTTCTTTAGACGATATCTGAAAAACTCTTGGCTTATTTATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01277	20347	23401	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001277s00024297.1	PF00293.23	NUDIX	92	214	2.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	96.769
SRR1783600	control	97.027
SRR1783602	moderate drought stress	95.055
SRR1811619	moderate drought stress	94.501

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	70.977
DRR006520	Root Summer glycyrrhizin high producing strain	70.510
DRR006521	Root Winter glycyrrhizin high producing strain	38.183
DRR006522	Root Winter glycyrrhizin high producing strain	37.069
DRR006523	Root Summer glycyrrhizin low producing strain	41.724
DRR006524	Root Summer glycyrrhizin low producing strain	42.137
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.919
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.633

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	225.403
SRR2868004	Drought Stress (root)	144.768
SRR2967015	Control (root)	140.073

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.380
SRR9715740	Leaf	29.973
SRR9715741	Leaf	29.327
SRR9715739	Root	70.432
SRR9715742	Root	77.418
SRR9715743	Root	72.361

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.987
SRR8749028	MeJA induced 9h	31.288
SRR8749029	MeJA induced 9h	26.517
SRR8749030	Uninduced	17.142
SRR8749031	Uninduced	10.907
SRR8749032	Uninduced	21.956

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	150.971
SRR8400027	Control - Root	119.893