Gene detail information of Glyur001274s00032049 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26695.1 | 1.00E-38 | Ran BP2/NZF zinc finger-like superfamily protein |
| NR | XP_003527154.1 | 4.98E-65 | PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Glycine max] |
| trEMBL | tr|I1KDB1|I1KDB1_SOYBN | 2.00E-65 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G24770.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01274 | 42867 | 44734 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001274s00032049.1 | PF00641.13 | zf-RanBP | 6 | 32 | 0.0018 |
| Glyur001274s00032049.1 | PF00641.13 | zf-RanBP | 50 | 78 | 2.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.568 |
| SRR1783600 | control | 1.548 |
| SRR1783602 | moderate drought stress | 0.450 |
| SRR1811619 | moderate drought stress | 0.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.993 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.598 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.207 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.202 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.342 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.276 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.963 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.361 |
| SRR2868004 | Drought Stress (root) | 1.677 |
| SRR2967015 | Control (root) | 0.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.781 |
| SRR9715740 | Leaf | 0.064 |
| SRR9715741 | Leaf | 2.386 |
| SRR9715739 | Root | 0.347 |
| SRR9715742 | Root | 0.279 |
| SRR9715743 | Root | 0.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.078 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.403 |
| SRR8400027 | Control - Root | 6.270 |