Gene detail information of Glyur001272s00032527 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54290.1 | 1.00E-24 | cytochrome c biogenesis protein family |
| NR | XP_004516451.1 | 1.09E-28 | PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 1-like isoform X2 [Cicer arietinum] |
| COG | YP_007133178.1 | 9.00E-12 | cytochrome c biogenesis protein transmembrane region [Stanieria cyanosphaera PCC 7437] |
| Swissprot | tr|Q9M5P3|CCDA_ARATH | 1.00E-28 | Cytochrome c-type biogenesis ccda-like chloroplastic protein |
| trEMBL | tr|I1LSZ9|I1LSZ9_SOYBN | 1.00E-28 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G22350.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01272 | 8879 | 11776 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001272s00032527.1 | PF02683.10 | DsbD | 32 | 72 | 2.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.915 |
| SRR1783600 | control | 9.450 |
| SRR1783602 | moderate drought stress | 11.682 |
| SRR1811619 | moderate drought stress | 10.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.078 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.879 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.307 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.180 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.162 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.189 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.728 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.400 |
| SRR2868004 | Drought Stress (root) | 3.139 |
| SRR2967015 | Control (root) | 4.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.847 |
| SRR9715740 | Leaf | 8.724 |
| SRR9715741 | Leaf | 10.128 |
| SRR9715739 | Root | 1.821 |
| SRR9715742 | Root | 3.160 |
| SRR9715743 | Root | 2.679 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.056 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.922 |
| SRR8400027 | Control - Root | 3.835 |