Gene detail information of Glyur001272s00032526 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54290.1 | 2.00E-33 | cytochrome c biogenesis protein family |
| NR | XP_006591900.1 | 2.48E-54 | PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like isoform X2 [Glycine max] |
| COG | YP_007142323.1 | 3.00E-14 | cytochrome c biogenesis protein transmembrane region [Crinalium epipsammum PCC 9333] |
| Swissprot | tr|Q2QY07|CCDA2_ORYSJ | 1.00E-39 | Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (Precursor) |
| trEMBL | tr|I1LSZ9|I1LSZ9_SOYBN | 4.00E-55 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G22350.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01272 | 4820 | 9200 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001272s00032526.1 | PF02683.10 | DsbD | 63 | 96 | 1.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.522 |
| SRR1783600 | control | 9.033 |
| SRR1783602 | moderate drought stress | 6.969 |
| SRR1811619 | moderate drought stress | 6.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.461 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.234 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.120 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.539 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.955 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.882 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.296 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.410 |
| SRR2868004 | Drought Stress (root) | 16.857 |
| SRR2967015 | Control (root) | 16.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.011 |
| SRR9715740 | Leaf | 32.548 |
| SRR9715741 | Leaf | 21.774 |
| SRR9715739 | Root | 7.522 |
| SRR9715742 | Root | 10.427 |
| SRR9715743 | Root | 8.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.774 |
| SRR8749028 | MeJA induced 9h | 3.355 |
| SRR8749029 | MeJA induced 9h | 3.238 |
| SRR8749030 | Uninduced | 2.233 |
| SRR8749031 | Uninduced | 0.965 |
| SRR8749032 | Uninduced | 2.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.078 |
| SRR8400027 | Control - Root | 15.294 |