Gene detail

Gene detail information of Glyur001271s00028153

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06390.1	3.00E-165	FASCICLIN-like arabinogalactan protein 17 precursor
NR	XP_004487436.1	0	PREDICTED: fasciclin-like arabinogalactan protein 17-like [Cicer arietinum]
COG	YP_007129426.1	5.00E-10	beta-Ig-H3/fasciclin [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q66GR0\|FLA17_ARATH	0	Fasciclin-like arabinogalactan protein 17 (Precursor)
trEMBL	tr\|K7LVV1\|K7LVV1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G31691.1}

Sequence

Transcript Sequence

>Glyur001271s00028153.1
GCCATGTGTCACATGAGGAAAATCAGTAATCGGACACAACATTTCAGGGTTGCAATATTTTGTTTTCTGTCTCTGTGCTGTCAGAACTAAGAAGGACTCTCACAAGTCAAGTGTTGATTCCATAATTTCCATTCCTCCGCATTCTCTCTTTCGGAGGTCGCCATGGATTGCCGCATCTATAGCGTAACCACTTATCTTCCTCTTCTTCTCTTCCTCGTCTCCGGTTTCCGTTTCCCGGTAGCATTATCGGAAAATCCGAACACGAAGCTGAGGGCATCGTCTTCTTCTAATTCCTCATCACCAACGAGTCAAATCAACTCCAACTCAGTGCTAGTGGCTCTCCTGGACTCGCATTACACGGAACTCGCCGAACTCGTTGAGAAAGCAATGCTGTTGCAGACGCTGGAGGAAACCGTCGCCACCAAAAACATCACAATCTTCGCCCCCAAAAACGAAGCCCTCGAGCGCAATCTCGACCCTGATTTCAAGCGCTTCCTCCTCGAACCCGGTAATCTCCACTCCCTCCAGACCCTCCTCTTGTTCCACGTCATCCCCACCCGAATCGGATCCCAAGATCCACCCGGGTCAACCAGACACTTAACCCTCTCCGACCACAACCTCCACGTGTCCACCAACCTCACCACCGGAGAATGGACCGTCGACCGGACTCGGGTCATCCACCCGGACGTCGTTACCCGACCCGACGGCGTCATCCACGGGATCGAGCGCCTCCTCGTCCCTCGCTCCGTCGAGGACGACTTCAACCGCCGCCGCAGCCTCCGCTCAATCACCGCCGTCAAGCCGGAGGGGGCACCTGAAGTGGACCCGAGAACCCACCGGCTGAAGAAGCCACCACCGCCGGCGAAGCCCGGTTCCCCTCCGTCGCTTCCGATCTACNACGCCATGGCTCCGGGACCCTCTTTGGCTCCAGCTCCGGCACCGGGACCCGGAGGGCCGCGCCACCACTTCAACGGCGAGGCACAGGTGAAGGACTTCATCCAAACTCTGCTCCATTACGGCGGGTACAACGAAATGGCTGATATTCTGGTAAACCTAACGTCGTTGGCGACTGAGATGGGTCGTTTGGTCTCGGAGGGTTACGTGCTTACAGTTTTGGCACCAAACGACGAGGCAATGGCGAAGTTAACGACGGACCAGTTGAGCGAACCGGGTGCACCGGAGCAGATAATGTACTACCATCTGATACCGGAGTACCAGACGGAAGAGAGCATGTACAACGCGGTTAGAAGGTTCGGGAAGGTACGGTACGATACCCTGCGGTTACCGCACAAGGTGGTGGCTCAGGAGGCCGATGGGTCCGTCAAATTTGGGCAGGGTGACGTGTCTGCTTATTTGTTTGACCCGGATATCTATACCGACGGGCGGATCTCGGTGCAGGGGATTGACGGGGTTTTGTTTCCGATGGAAGAGGAGACGGTGGAGCGGGTCAAACCCGTTGCCCGGACGGGTCAACCCGCTAAAGTTGCTGTTCAACACAGGAGAGGAAAATTGTTGGAAGCAGCATGCTGGATGGTTGGAACCTTTGGACAGCATTCTAGATTCGCCTCTTGTCAATAAAAAAGCCCACTTTTTTTTTTTGCTAGCAAGATTCGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01271	70678	73657	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001271s00028153.1	PF02469.17	Fasciclin	64	193	3.50E-21
Glyur001271s00028153.1	PF02469.17	Fasciclin	300	420	4.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.766
SRR1783600	control	27.028
SRR1783602	moderate drought stress	23.249
SRR1811619	moderate drought stress	23.031

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.879
DRR006520	Root Summer glycyrrhizin high producing strain	20.059
DRR006521	Root Winter glycyrrhizin high producing strain	4.351
DRR006522	Root Winter glycyrrhizin high producing strain	4.257
DRR006523	Root Summer glycyrrhizin low producing strain	10.820
DRR006524	Root Summer glycyrrhizin low producing strain	11.253
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.193
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.868

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.686
SRR2868004	Drought Stress (root)	26.168
SRR2967015	Control (root)	30.104

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.886
SRR9715740	Leaf	14.319
SRR9715741	Leaf	13.449
SRR9715739	Root	39.977
SRR9715742	Root	39.867
SRR9715743	Root	39.582

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.686
SRR8749028	MeJA induced 9h	15.081
SRR8749029	MeJA induced 9h	13.064
SRR8749030	Uninduced	6.947
SRR8749031	Uninduced	0.758
SRR8749032	Uninduced	3.592

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.262
SRR8400027	Control - Root	45.942