Gene detail

Gene detail information of Glyur001271s00028146.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G15440.1	7.00E-112	hydroperoxide lyase 1
NR	BAJ78217.1	0	13-hydroperoxide lyase [Lotus japonicus]
COG	YP_002501570.1	7.00E-22	heme peroxidase [Methylobacterium nodulans ORS 2060]
Swissprot	tr\|Q9ZSY9\|C74B2_ARATH	0	Linolenate hydroperoxide lyase, chloroplastic {ECO:0000305\|PubMed:9701595} (Precursor)
trEMBL	tr\|E9RHS5\|E9RHS5_LOTJA	0	13-hydroperoxide lyase {ECO:0000313\|EMBL:BAJ78217.1}

Sequence

Transcript Sequence

>Glyur001271s00028146.1
CTGCCATCGGTGCCGCCACCGTTGTCGCTGGCAGCGACGCCGACGGAGTTTTTTTTCCGGCAGATCCCTGGAAGTTACGGGTGGCCGCTGCTGGGGCCCGTGTCGGACCGGCTGGACTATTTCTGGTTCCAGAAGCCAGAGAGCTTCTTCAGGACGCGAATGGACAAGTACAAGAGCAGCGTGTTCCGCACTAATGTTCCTCCCTCGTTCCCCTTCTTCCTCAACGTGAACCCCAACGTCATCGCCCTCCTCGATTGCAAGTCCTTCTCCCACCTCTTCGACATGGACCTCGTCGACAAGAAAAATGTCCTCGTCGGAGACTTTGTCCCCAGCGTTGCCTTCACCGGAAACATCAGGGTCGGTGTCTACCAAGACACTTCTGAACCTCAACATTCTAAGGTGAAGAGGTTCAGCATGGACACCTTGAAACAAAGCTCGGGCATATGGGCATCGGAGCTGGTATCGAACCTGGACACATTGTGGGACTTTTTTTTAACAACATTGTCCACGTCGTCCACACCCGCAAGTTACCTGTTCCCGCTGCAGCAATTCCTGTTCACCTTCCTCTGCAAAGTCCTCACCGGTGCGGACCCTTCCCTTTTTTTTATAGTCGCCGACTCAGGCTACGCCATGCTCGATCGCTGGCTCGCACTCCAGCTCCTCCCCACCGTCAGCATCGGCTTCCTCCAACCCCTTGAAGAAATCTTCCTTTTTTTTTTCACCTACCCTTTTTTCCTCGTCAGTGGAGACTACAACAACATCTACAACTTCGTCAAACAACAAGGCAAGGAAGTGATAAAAAGGGGTGTAACGGAGTTCGGGTTGAGCGAAGAAGAGGCCATCCACAACTTGCTTTTCACTCTGGGTTTCAACGCGTTTGGTGGGTTTTCAGTTTTCCTTCCGAGTTTGATAGACGCAATAGCGAGTGATTCGACCGGTTTGCAAGAGAAGCTGAGGAAGGAAGCGAGGGAGAAAGGAGGGTCAACTCTGGGGTTTGACTCAGTGAAAGAGATGGAGCTGATTAATTCGGTGGTTTACGAAACACTGCGGATGAACCCGCCGGTTCCGCTCCAGTACGGTCGAGCCAGAAAGGATTTCCGGCTCAGTTCTAATGACTCGGCGTTCCACGTGAAGAAGGGTGAGTTGCTATGCGGGTACCAGAAGCTGGTGATTTTTTTTCCGGCTGTGTTCGACGAACCGGAAAGTTTCAAACCGGACCGGTTCACTGCTGAGAAAGGGGCCCAGTTGTTGGACTACTTGTATTGGTCCAATGGGCCTCAAACTTTTTTTTCCAGCGTGTCCAATAAACAGTGTGCGGGTAAGGACGTTGTGACCCTCATTTTTTTTTTGATTGTGGCCTACTTGTTTCGCAGGTACGATTCCATCAAAGGGGATTTTTTTTTCATCACTTCCCTTCAAAGGGCCAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01271	23542	27041	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP74B2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10528	HPL	EC:4.1.2.-	alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0004497 monooxygenase activity

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001271s00028146.1	PF00067.17	p450	314	460	7.00E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.652
SRR1783600	control	36.130
SRR1783602	moderate drought stress	32.129
SRR1811619	moderate drought stress	32.843

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.137
DRR006520	Root Summer glycyrrhizin high producing strain	25.566
DRR006521	Root Winter glycyrrhizin high producing strain	6.629
DRR006522	Root Winter glycyrrhizin high producing strain	5.203
DRR006523	Root Summer glycyrrhizin low producing strain	9.069
DRR006524	Root Summer glycyrrhizin low producing strain	8.636
DRR006525	Leaf Summer glycyrrhizin high producing strain	82.480
DRR006526	Leaf Summer glycyrrhizin high producing strain	80.014

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.387
SRR2868004	Drought Stress (root)	4.006
SRR2967015	Control (root)	5.895

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	153.224
SRR9715740	Leaf	155.795
SRR9715741	Leaf	155.457
SRR9715739	Root	65.013
SRR9715742	Root	61.431
SRR9715743	Root	64.391

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.168
SRR8749028	MeJA induced 9h	7.744
SRR8749029	MeJA induced 9h	5.792
SRR8749030	Uninduced	1.539
SRR8749031	Uninduced	0.404
SRR8749032	Uninduced	1.337

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.117
SRR8400027	Control - Root	26.686