Gene detail information of Glyur001269s00036692 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03230.1 | 6.00E-28 | Protein of unknown function, DUF584 |
| NR | XP_003537294.1 | 8.59E-61 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 34-like [Glycine max] |
| trEMBL | tr|I1L8V9|I1L8V9_SOYBN | 3.00E-61 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G06050.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01269 | 62801 | 63319 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001269s00036692.1 | PF04520.8 | Senescence_reg | 29 | 172 | 3.70E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.440 |
| SRR1783600 | control | 19.005 |
| SRR1783602 | moderate drought stress | 18.286 |
| SRR1811619 | moderate drought stress | 19.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.306 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.419 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.736 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.651 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.450 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.811 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.213 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.234 |
| SRR2868004 | Drought Stress (root) | 41.585 |
| SRR2967015 | Control (root) | 64.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.821 |
| SRR9715740 | Leaf | 7.991 |
| SRR9715741 | Leaf | 22.013 |
| SRR9715739 | Root | 5.964 |
| SRR9715742 | Root | 20.503 |
| SRR9715743 | Root | 18.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 48.516 |
| SRR8749028 | MeJA induced 9h | 100.325 |
| SRR8749029 | MeJA induced 9h | 62.140 |
| SRR8749030 | Uninduced | 28.672 |
| SRR8749031 | Uninduced | 148.078 |
| SRR8749032 | Uninduced | 78.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.778 |
| SRR8400027 | Control - Root | 24.390 |