Gene detail

Gene detail information of Glyur001269s00036688

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G30080.1	4.00E-111	auxin response factor 16
NR	KHN48291.1	0	Auxin response factor 18 [Glycine soja]
Swissprot	tr\|Q653H7\|ARFR_ORYSJ	8.00E-175	Auxin response factor 18
trEMBL	tr\|K7LHL4\|K7LHL4_SOYBN	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur001269s00036688.1
ATGCAATCACTTTGTGAGATGATTGCATTTATGGATTCAAAGGAGAAATCAAAAGAGGTGGTGGAGAGGTGTTTGGATCCTCAACTATGGCATGCNTGTGCAGGTGGGATGGTTCAAATGCCAGCATTGAACAGTAAGGTCTATTATTTCCCTCAGGGTCATGCTGAGCATGCATGTGGACCCGTTAACTTCATGAGTTGCCCCAAGGGTCCACCTTTGGTTCCATGTAGAGTTGCTTCCATCAAATACATGGCTGATCCTGACACAGATGAGGTCTATGCCAAGCTTAGCCTTGTTCCTCTTAACAGCAATGATGCTGCTGAATATGACCGTGATGTTGTTGCCGGCGGCATCAATGGTTCTGAAAATAATCAGGACAAGCCTCCCTCATTTGCAAAGACGTTGACACAATCGGATGCTAATAATGCTGAGAATGGGGATCTTTGTGTTGGGATTCGAAGAGCGAAAAAGGGTATTGGCATTGGTGGTGGACCTGAGGGTTCCTCGGGGTGGAATCCTGCCGGTGGAAGTTGCCCCGTGCCTTGGTTCGATCAACAGAATGAGAACAGAATGATGGTGAGGAATAGTAACAGCAATAATGGTTTGAACCCAAGTGCCAATATGATGGGGAAGGCAAAAGTGAGGCCAGAAGCAGTTGTTGAAGCTGTAACTCTTGCTGCCAATAAGCAACCCTTTGAGGTTGTTTACTACCCTCGGGCAAGTACACCGGAGTTTTGTGTGAAAGCCTCCTCAGTTGAAGCTGCAATGCAAATTAGATGGTGTTCTGGAATAAGATTCAAGATGGCCTTTGAAACTGAGGACTCCTCGCGGATAAGTTGGTTTATGGGAATCGTTTCTTCGGTTCAAGCTGCTGATCCCCTTGTCTGGCCTAACTCACCTTGGAGACTTCTCCAGGTTAAATGGGATGAACCAGATTTACTACAAAATGTGAGTAGGGTGAGCCCGTGGTTGGTTGAATTGGTAGCAAATATTCCCGCCATCAACTTTTCCCCTTACTCACCAACACGGAAGAAATCTAGATTGCCCCAGCACCCCGATNTCCCCCTTGATGGCCAGATTCCTGTGCCAACATTTCCCAGCAACCTTCTAGGTCCTAGCAACCCATTTGGTTGTCTNCCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTTACCAGATCTTCACCTCAACAAAATGCAAACAAGTCTATTTCAGGCTGGTTTCCTGCCTCTTGATCACGCCGCTACATCACCAAGTGTCTCTAATAACCTGTTATTGCAAAAGCCTAGCATGAGTGAGAATGTCTCTTGCTTGCTTTCTATGGCAAGTTCTACTCATTCTTCAAAGAAACTAGATGATGAGAAGACACCCCAACTTATGCTTTTTGGCCAAAAAATTCTCACTGAGCAGCAAATCTCTCTGAGCAGCTCTGGTGATACAGTCTCCCCAGTTCTTACTGGAAATTACTCATCAGATGGAAATGCGGATAAAGCGACTAATTTTTTTTATGGTTCTGGATCTGCTCTTCATCAACAAGACTNACACAAACGCTCCTCTTGTGAGAGGTTCCAATGGTATAAGGATAACCGCCAAGAAATNGAGGCCAGTTTGGAGACCGGTCAGTGTAAAGTTTTTATGGAATCGGAAGATGTAGGCCGGACAATTGACCTCTCGTCGCTTGGGTCTTATGATGAATTGTACAGAAAGTTGGCAGANATGTTTGGCATAGAAAAATCCGAGATGCTAAGTCACGTGCTCTACCGCGATATNACTGGAGCAGTCAGACACATTGGAGATGAACCATTCAGTAACTTCACAAGAACAGCCCGGAGGTTGACTATTCTAATGGATTCTAGCAGCGACAATGTAGGAGTGTAGTGGAGGAAAATCAANCATTTTTTCAATTGTACAGCTGGTTCATGAAATCCTTTAATCCCACTTTAATCCCACTCTAACACTTTACCCCTTCCTGAGCAATTGAAGGAGACCCTCTTATCTGATTTTTGAATATCAAACTCTCCAGATAAATGTTTCTCTTCTATCTCAAAGGGGATGTTTGGATTTTGGAATTTTTAATGGAATGATCATAACTCGTGTTTTTCCTTCTCTCTGATTTTTTTTTAATTTGTCTAATTCTTCAATACGTATTGAAAACAAGGGGAAGTGGCTTTCCTACTCTNGTGCATTTTACCTTTTCTGAGATTGTAACATTTGTCTTCTTGTTGCCGCCTTATTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01269	31914	35166	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001269s00036688.1	PF06507.8	Auxin_resp	222	305	5.70E-33
Glyur001269s00036688.1	PF02309.11	AUX_IAA	526	627	1.40E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.702
SRR1783600	control	6.827
SRR1783602	moderate drought stress	9.973
SRR1811619	moderate drought stress	9.783

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.905
DRR006520	Root Summer glycyrrhizin high producing strain	9.884
DRR006521	Root Winter glycyrrhizin high producing strain	6.512
DRR006522	Root Winter glycyrrhizin high producing strain	6.535
DRR006523	Root Summer glycyrrhizin low producing strain	19.474
DRR006524	Root Summer glycyrrhizin low producing strain	19.817
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.984
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.967

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.091
SRR2868004	Drought Stress (root)	8.190
SRR2967015	Control (root)	9.623

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.292
SRR9715740	Leaf	21.794
SRR9715741	Leaf	26.198
SRR9715739	Root	11.388
SRR9715742	Root	32.189
SRR9715743	Root	25.903

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.490
SRR8749028	MeJA induced 9h	12.060
SRR8749029	MeJA induced 9h	13.178
SRR8749030	Uninduced	9.580
SRR8749031	Uninduced	3.910
SRR8749032	Uninduced	4.491

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.839
SRR8400027	Control - Root	8.094