Gene detail

Gene detail information of Glyur001269s00036687.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11880.1	0	Pyridoxal-dependent decarboxylase family protein
NR	XP_003542519.2	0	PREDICTED: diaminopimelate decarboxylase 1, chloroplastic-like isoform X1 [Glycine max]
COG	YP_002248957.1	2.00E-91	diaminopimelate decarboxylase [Thermodesulfovibrio yellowstonii DSM 11347]
Swissprot	tr\|Q94A94\|DCDA2_ARATH	0	Diaminopimelate decarboxylase 2, chloroplastic (Precursor)
trEMBL	tr\|I1LZ51\|I1LZ51_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G20390.1}

Sequence

Transcript Sequence

>Glyur001269s00036687.1
CAAATGCCGAGAGAATAGAGATGTTTCAAAAAATTCATTAGAAATAGAAACAAAAAATAACGCTTGAACACTTCAGCAGTTCCTGTGTTTGTGGGTTTGGGCTGCTTTGAACTTGTGTTCTGGAACATTATTAGTTATTACCACTTCAATGGCGACCTCATCACACCTNCTCCATTACCATTCTCCTTCCCTTTCCAAAACCTTTAAATTCAATCACCCTTTGAACCAAAACCCTTTCTCCCAAAACCTAATTCTACCCCTCAAACCCACCATTAAACCTTCCTTTAATCTCAGAGCAGTTCTCTCCGAGAAGATCACTGCTGAACCCTCACTTAACGAATCCACTCGTTTTCAGTGTTTCACCAAGTATGAAGATGGGTTTCTGTACTGTGAGGGCCTTAAAGTGCATGACATTATGGAATCTGTTGAGAGAAGGCCTTTCTATTTGTACAGTAAGTCTCAGATTACTAGAAATTATGAAGCCTATATGGATGCCTTGGTGGGTTTGAGGTCTATAATTGGGTATGCCATCAAGGCCAACAATAATTTAAAGATTCTGAAGCATTTGAGGCAGTTGGGTTGTGGTGCTGTGCTTGTGAGTGGGAATGAGCTTAGACTGGCTCTTCAAGCTGGATTTGATCCCACAAGGTGTATCTTTAATGGGAATGGGAAAATCTTGGAGGATTTGGTATTGGCTGCCAAAGAAGGTGTTTTTATCAACATTGATAGTGAATTCGACTTGGAAAACATTGTAGCGGCTGCAAGAATTGCTGGAAAGAGGGTGAATGTTTTGCTTCGAATTAATCCTGATGTGGATCCGCAGGTCCATCCTTATGTTGCAACTGGGAATAAGAACTCCAAATTTGGCATACGAAATGAGAAGCTACAGTGGTTTCTAGATGCTGTGAAGGAGCATCCTAAGGAGTTAAAACTTGTAGGGGCCCATTGCCATCTTGGCTCAACAATTACCAAGGTGGACATTTTTCGGGATGCTGCGATTATTATGGTCAACTACATTGACCAAATCCGAGCTCAAGGTTTTGAAGTTGATTATTTGAATATTGGTGGTGGACTTGGGATAGATTATCATCATTCTGGTGCTATCCTTCCCACACCCAGAGATCTCATTGATACTGTTCGGGAGCTTGTCCTTTCTCGTGGTCTTAATCTCATCATTGAACCAGGGAGATCACTCATCGCAAACACTTGTTGTTTAGTTAACCGGGTAACCGGTGTCAAAACTAATGGATCTAAAAACTTTGTTGTGATTGATGGAAGCATGGCCGAACTTATCCGTCCTAGTCTTTATGATGCTTACCAGCATATAGAGCTGGTTTCCCCTGCCCCGNCAAATGCTGAGATAGCAAACTTTGATGTGGTTGGCCCTGTTTGTGAGAGTGCAGATTTTTTAGGAAAAGATAGACAACTTCCAACTCCAACCAAGGGTACCGGTCTTGTTGTTCATGATGCTGGTGCTTATTGTATGAGTATGGCATCAACTTACAATCTAAAGATGAGGCCTCCTGAGTATTGGATTGAAGAAGATGGATCAGTGAGGAAAATCAGACACGGGGAGACATTTGAAGACCACATGCGGTTTTTTGAGGGCCTTTGAGAAGAGACCTAATTTTTTGGTGGAAAAGGATGCTTGAGTTTTGTTGTAGATCTCTCTAGCTAGAGANTGCAATGTTATTTTTAGTTCTATTTCGTCTATTCTGGTTCAATCTTGACCGTCTATTTTTTCTTTTTCAAAAAGAAATGCGATAAAGATCAAGATTCATATTTCATGAATTCAACTAGATTCAACACTTCATTTAATATCCTCCAAGTTTTTAGTTTCAGTCCTCAGTAAATGCAAGTATGCCTATAGCTTCCACTTGAAATGTGGAGAATATGTATGATGGCATTTGTTTAATAGTTAGTCTTATGATATTTTATGTTTTGGACTTAATTTCTTCACAATGAAGTATATTAGATCCATGGAGTTTAATTTTCTGGTTTAGCAGGAAGTCTCAGATGCTGTAGCATGGTATAGAAGTCTTGCATCTATAAATGTTACTTTTACTTTTACTGTTTTTTTACAGATAAAAGTACACTAGCCCACTTTTTCCAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01269	6122	11905	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01586	lysA	EC:4.1.1.20	Biosynthesis of amino acids	map01230
			Lysine biosynthesis	map00300

Gene Ontology

biological_process
GO:0009089 lysine biosynthetic process via diaminopimelate

molecular_function

GO:0003824 catalytic activity

GO:0008836 diaminopimelate decarboxylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001269s00036687.1	PF02784.11	Orn_Arg_deC_N	108	351	3.40E-49
Glyur001269s00036687.1	PF00278.17	Orn_DAP_Arg_deC	356	463	1.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	61.095
SRR1783600	control	61.634
SRR1783602	moderate drought stress	13.523
SRR1811619	moderate drought stress	13.707

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.937
DRR006520	Root Summer glycyrrhizin high producing strain	28.633
DRR006521	Root Winter glycyrrhizin high producing strain	3.642
DRR006522	Root Winter glycyrrhizin high producing strain	3.615
DRR006523	Root Summer glycyrrhizin low producing strain	8.476
DRR006524	Root Summer glycyrrhizin low producing strain	8.722
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.489
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.436

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	168.204
SRR2868004	Drought Stress (root)	55.973
SRR2967015	Control (root)	55.182

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.310
SRR9715740	Leaf	1.091
SRR9715741	Leaf	1.808
SRR9715739	Root	27.054
SRR9715742	Root	53.520
SRR9715743	Root	54.356

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.239
SRR8749028	MeJA induced 9h	0.904
SRR8749029	MeJA induced 9h	1.509
SRR8749030	Uninduced	0.504
SRR8749031	Uninduced	0.489
SRR8749032	Uninduced	1.210

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	66.112
SRR8400027	Control - Root	59.163