Gene detail

Gene detail information of Glyur001267s00031640

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51860.1	5.00E-129	cation exchanger 3
NR	XP_003518305.2	0	PREDICTED: vacuolar cation/proton exchanger 3-like [Glycine max]
COG	YP_007092535.1	1.00E-71	CaCA family calcium/proton antiporter [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q39253\|CAX1_ARATH	0	Vacuolar cation/proton exchanger 1
trEMBL	tr\|I1JHC6\|I1JHC6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G39150.1}

Sequence

Transcript Sequence

>Glyur001267s00031640.1
ATGGAGGAGCTTTGCAACAAGAGTACTTCTAGTGGAAGTGCCATGGTGTCAAAGAAGTCAGATATTCCAGTTGTGGTCATAAATAATAAAAAGCTTCGTTTCCAAATACTAAGAGATTTCATGACCAATTTGAGAGAGGTCATCTTTAGCACTAAGCTTGTTGTGCTTTTTCCGGCTGTCCCTTTAGCTGTTGCTGCAGATTTTTATAGCTTTGGAAGGCCTTGGATTTTTGCTTTGAGCCTGCTTGGACTTGCTCCGCTGGCTGAACGTGTCAGCTTCCTCACCGAGCAAATTGCATATTACACCGGCCCAACAGTTGGAGGGCTTCTGAATGCAACTTGTGGTAATGCAACCGAGATGATCATAGCATTATTTGCACTTCACAAGAACAAAGTAAATGTTGTGAAGTTCTCCCTGCTCGGTTCCATTCTCTCAAACCTTCTCTTGGTTCTTGGCAGCTCACTCCTCTGTGGTGGCTTAGCTAACCTCAAGAGGGAGCAAAGATATGACAGAAAACAGGCGGATGTAAATTCATTGCTTTTGTTGCTGGGGTTGCTATGCCATTTGCTGCCATTACTGTTCAGATACGCCTTGGCAGGGGGCAATTATTCTGTAGCCACTAGTATTCTTCAATTGTCAAGAGCAAGCAGCATTGTCATGCTTCTAGCATATGTCGCATATATCTTCTTCCAATTAAAAACTCACCGAAAAATATTTGATGCACATGAGGAAGAAGAAGATGAAGAGAAGGCNGTGATAGGATTTTGGAGTGCATTTACTTGGTTGGTGGGCATGACACTGGTCATATCTGTGCTTTCTGAATATGTTGTGGGAACTATTGAGGCTGCTTCAGATTCTTGGGGAATTTCTGTTAGCTTCATTAGCATAATTTTGCTGCCAATTGTTGGGAACGCTGCAGAACACGCCGGTTCAATCATATTTGCTTTCAAGAACAAGTTGGACATATCTTTAGGTGTTGCCATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTGGTTGTTGCATGGATAATGGGTATACGAATGGATCTGGANTTCAACCTTCTTGAAACAGGATGTCTTGCTTTTGCAATTATTGTTACAGCATTCACTTTACAGGATGGAACTTCACACTACATGAAAGGAGTGATTCTTTCTCTATGTTACATTGTCATTGCTGCATGTTTTTTCGTTCTCAAAGCTCCACAAGTCAACCAATATCCTAGTGTCAACTTTGGAGCTAAACCATCCTTTGATGCCATCGCCATTTGACTAACTTTGCTTCCCCATTCTGAGAAAAACAATCTGACACAACGGATAACTGAAACTCCTCACTTGAGTTACAAAGTTGGATTTCTATATTCATGTTGGAACTTGTGTGGCTTTGAAACTGATCAGGCTTTGAGATCAATCATAAACTATAAGAAGTAGAGAATTCAATNCTTTGTATAATTCTTTCTTTGTAATAAGGCTTAACAATGACACTTTGGGTTTGAAATGGCGCCTATGTTCTTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01267	75588	79910	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0006816 calcium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0008324 cation transmembrane transporter activity

GO:0015369 calcium:proton antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001267s00031640.1	PF01699.19	Na_Ca_ex	82	230	5.70E-23
Glyur001267s00031640.1	PF01699.19	Na_Ca_ex	267	398	4.60E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	37.064
SRR1783600	control	37.112
SRR1783602	moderate drought stress	31.824
SRR1811619	moderate drought stress	31.198

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.018
DRR006520	Root Summer glycyrrhizin high producing strain	2.168
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.295
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.913

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.335
SRR2868004	Drought Stress (root)	0.243
SRR2967015	Control (root)	0.123

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.731
SRR9715740	Leaf	66.092
SRR9715741	Leaf	33.033
SRR9715739	Root	18.296
SRR9715742	Root	18.770
SRR9715743	Root	20.489

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.087
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.125
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.059

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.044
SRR8400027	Control - Root	2.727