Gene detail

Gene detail information of Glyur001267s00031635

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58760.1	0	damaged DNA binding 2
NR	AES98591.2	0	damaged DNA-binding protein [Medicago truncatula]
COG	YP_007037039.1	2.00E-07	hypothetical protein BN6_28570 [Saccharothrix espanaensis DSM 44229]
Swissprot	tr\|Q6NQ88\|DDB2_ARATH	0	Protein DAMAGED DNA-BINDING 2
trEMBL	tr\|G7KE47\|G7KE47_MEDTR	0	Damaged DNA-binding protein {ECO:0000313\|EMBL:AES98591.2}

Sequence

Transcript Sequence

>Glyur001267s00031635.1
CACATTTCCTGTCCCAAAGTCCCAACTCCCAAGTCTCAAAAACCCTTCTCTTTTTGTCCTCGTGCGTGGCTTTCTATTTTCCCGCTTCNACCATCACAGTGAAAAGGACCCGAAAAATGGCACCAGTTACTCGTAGAGTCTCGTTCCCCAAGGTTCTCATTGAGAGAGACTCTGACTCGGAACAGAGTTCATCCGAAGAAGAAGAAGAAGAAACACTTGAAGAAGAAGAAGAAGAAGAAACGCTTGAAGAAGAAGATGGGGTTACTGAAAATGGGAAGATTGAGAAACTGGAAGTGGGTTTGGACACGAACAGGAAAGGGAAAGCACTCATCACTATCAGTCTCAAAAAAGTTTGCAAGGTATGTAAGAAGCCTGGACATGAAGCAGGCTTCAAGGGTGCTACCTATATTGATTGCCCAATGAAGCCTTGCTTTCTGTGTAAAACTCCTGGACATACCACTTTGAATTGCCCCCATCGGGTCACTACTGAGCATGGTGTTATTCCGGCGCCCCGCAGAAAAACATGTAAACCTTTGGAGTATGTGTTTGAACGCCAGCTAAGACCAGCCATTCCTTCAATGAAGCCCAAATATGTGATCCCAGACCAAGTAAATTGTGCTGTTATCAGATATCACAGTAGACGGGTAACATGCTTGGAGTTCCACCCGACAAAGAATAATATCCTTTTATCAGGAGATAAGAAAGGACAACTTGGAGTCTGGGATTTTGTAAAAGTACATGAGAAGGTAGTCTATGGGAACATACATTCTTGTATACTGAATAACATGAGGTTTAATCCTACAAATGATTGTATGGTCTATTCTGCATCTTCNGATGGAACCATTAGTTGTACTGACTTGGAGACTGGATTATCATCCTCTCCGATGAACCTGAATCCTGGAGGATGGCAGGGTCCGAACACTTGGAAAATGCTCTATGGCATGGATATTAACTGGGAGAAAGGCCTTGTGCTTGTTGCTGATAACTTTGGTTTTCTTCACTTGGTTGATATGCGGTCCAACCACAAGAATGGTGATGCAATTTTGATCCATAAAAAAGGTACCAAAGTTGTNGGTATCCATTGCAATCCAATCCAACCAGACATCCTTTTGACTTGTGGAAATGATCATTTTGCTCGTATTTGGGATATGCGTCGAATGGAAGCTGGATCATCCATTTATGACCTTGAGCACAAGCGCGTTGTTAACTCTGCATATTTCTCTCCGTTATCTGGGAGCAAAATTCTTACTACATCACAGGACAACCGTCTTCGTATATGGGATTCTATCTTTGGCAATATGGACTCNCCCAGCCGAGAAATTGTGCATAGTCATGATTTCAATCGGCATTTGACCCCCTTCAAAGCTGAATGGGATCCAAAGGATCCATCGGAGTCGCTTGCTGTTGTTGGTCGTTACATAAGTGAGAATTATAATGGTGCAGCCCTGCATCCCATTGATTTTATAGATATCAGTACAGGCCAATTGGTAGCAGAAGTCATGGACCTAAACATCACAACCATCAGTCCAGTGAATAAGCTGCATCCACACGATGATATCCTGGCATCTGGGAGTTCTAGATCTCTGTTCATTTGGAAGCCCAGGGAGAAGTCCGAGCCTGTCGAGGAGAAGGATGAGAGGAAAATTGTGGTTTGTGGAAGAGCTGAGAAGAAACGCGGTAAGAAGAATAAGAAGAATGGCGGCAATAACAGCGATGAATCCGACGATGAAGGATTCATTTCCAAGCTCAAGAAGTCCAAATCCAAGAAGACCGAGTGGAAATTGACTCGCTGCAAGAACAAGNAGAATCACTAAATTGTGAAACCAGTGCTGCAGTGTATTAAGATGTTCTTTATTTTTTTTGAAGGTTTTTCAATCCAACAACCACGCGCTAACCCTCTATTGGTGGCCAAGCTCCCTTCCTAGTTGTCTTTTTGGGGCTGCACAAGTGCTTTTATCACAGTGAGCCATCTTCTTTGGCTTGTTCCCTTGGATGGAAGATTTTGTATGTTTGTTATGGAGCAGTGATTTTGTGTAAAGATGCAGGCCTGGCTGACTTCNTATGTGACCATTCTCCTTTTGTGGTGCTAGTGTATCATATCATGTTCATAATAGAAGGCAATGCTCCATAGTATTTTAGGATATAATAGTAGATTTTGTTGGACTTTTACCTTTTCTCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01267	36475	41903	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001267s00031635.1	PF00400.27	WD40	169	203	0.00094
Glyur001267s00031635.1	PF00400.27	WD40	358	389	0.0009

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.731
SRR1783600	control	3.761
SRR1783602	moderate drought stress	2.988
SRR1811619	moderate drought stress	3.028

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.636
DRR006520	Root Summer glycyrrhizin high producing strain	1.667
DRR006521	Root Winter glycyrrhizin high producing strain	0.869
DRR006522	Root Winter glycyrrhizin high producing strain	0.945
DRR006523	Root Summer glycyrrhizin low producing strain	2.777
DRR006524	Root Summer glycyrrhizin low producing strain	2.875
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.022
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.028

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.886
SRR2868004	Drought Stress (root)	9.683
SRR2967015	Control (root)	7.503

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.135
SRR9715740	Leaf	42.854
SRR9715741	Leaf	35.292
SRR9715739	Root	0.813
SRR9715742	Root	3.033
SRR9715743	Root	2.739

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.265
SRR8749028	MeJA induced 9h	18.611
SRR8749029	MeJA induced 9h	16.147
SRR8749030	Uninduced	9.271
SRR8749031	Uninduced	7.182
SRR8749032	Uninduced	6.712

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.275
SRR8400027	Control - Root	5.257