Gene detail

Gene detail information of Glyur001264s00041263

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15190.1	8.00E-34	chloroplast 30S ribosomal protein S20, putative
NR	XP_003628554.1	1.66E-77	30S ribosomal protein S20 [Medicago truncatula]
COG	YP_007118368.1	3.00E-15	30S ribosomal protein S20 [Oscillatoria nigro-viridis PCC 7112]
Swissprot	tr\|Q9ASV6\|RR20_ARATH	1.00E-50	30S ribosomal protein S20, chloroplastic (Precursor)
trEMBL	tr\|G7LDS2\|G7LDS2_MEDTR	6.00E-78	30S ribosomal protein S20 {ECO:0000313\|EMBL:AET03030.1}

Sequence

Transcript Sequence

>Glyur001264s00041263.1
ATTTGATCCATCGTTTATCGTTTTATACGTTATCCCCTAGCCTCAACGGATAAAGAGAGACCCATCAAAGGGAAGAGGCTCTGCGCTCACAGAGAGAGAGAGAGAGAGAGAGATATGGCAGCAGTTTCGTGCTCATGCTCATGGCTCATCCTTCCCTCCAAAATGAAGGGCCTTACCCTCACTTCCTCTCCTTCTTCCGTTTCCAATTCCACCTCTCTGGGTTTCTCCAAAAACCTTTCTCACTCTCTCTTTTCGCAAGGTAGCTTGTCGTTGAGTACGGTGCAGAGGCGTGGCGTGGTGTTTGTGAGACGGCCCCAAAGCAAAAGGTGGATTCGGCCAGTGAAGAGAGCTCGCCAGGCTGAGAAACGCCGCATTTACAACAAAGCCCGTAAATCAGAGATAAGAACACGCACCAAGAAGGTTTTGGAAGCTCTGGAACTGCTCAAGAAGAAACCGGATGCACAAGCTGAAGAAATCCTGTCAATCGAGAAGATGATTGGAGAGGCATACTCAGTAATTGACAAAGCAGTGAAAGTTGGCACGCTGCACAGGAACACTGGAGCGAATCGCAAGTCTCGGCTTGCCAGAAGGAAGAAGGCAGTGGAGATCCATCATGGCTGGTATGCCGCAGTTCCTGAAGCCAGTGTCTGAAACAATCCTCGCACTGGTTTCACATGGATTAAAATGTGGTGCCAGTGAAGACTTACACAATTTTCTTTTTCTCACTCTGTTGAAACATTGTTTTATTTAGTCTTCTTTGATGTCAGTTCAAATTGCTTTATTATCATCATGTAGAGCCATTTGATTTTAACTGCATCTTCGTAATTAGCTTTTATTATTGCATGCCTCCTTAAATTTGATTATAGTTGCGTTGTGGTGAAAACTTGATTGCTATGGTAATCCTGCTCGTGACTGCAGTTTCCCACACAAGTCACTAGCAGCTGTTTGTAATTGTGTAATTGTCACCGCATAATNTTTTTTTGATAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01264	58795	62480	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function

GO:0003723 RNA binding

GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001264s00041263.1	PF01649.13	Ribosomal_S20p	77	159	6.80E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.534
SRR1783600	control	5.692
SRR1783602	moderate drought stress	6.523
SRR1811619	moderate drought stress	5.433

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.410
DRR006520	Root Summer glycyrrhizin high producing strain	11.435
DRR006521	Root Winter glycyrrhizin high producing strain	12.027
DRR006522	Root Winter glycyrrhizin high producing strain	12.209
DRR006523	Root Summer glycyrrhizin low producing strain	11.879
DRR006524	Root Summer glycyrrhizin low producing strain	10.748
DRR006525	Leaf Summer glycyrrhizin high producing strain	104.114
DRR006526	Leaf Summer glycyrrhizin high producing strain	113.135

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.374
SRR2868004	Drought Stress (root)	16.983
SRR2967015	Control (root)	15.051

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	168.026
SRR9715740	Leaf	182.918
SRR9715741	Leaf	118.456
SRR9715739	Root	23.565
SRR9715742	Root	12.022
SRR9715743	Root	14.826

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.069
SRR8749028	MeJA induced 9h	11.767
SRR8749029	MeJA induced 9h	11.956
SRR8749030	Uninduced	10.643
SRR8749031	Uninduced	6.769
SRR8749032	Uninduced	12.745

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.035
SRR8400027	Control - Root	35.840