Gene detail

Gene detail information of Glyur001263s00024666

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G56310.1	3.00E-82	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004494357.1	0	PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Cicer arietinum]
Swissprot	tr\|Q9FMA1\|PP433_ARATH	9.00E-99	Pentatricopeptide repeat-containing protein At5g56310
trEMBL	tr\|G7KRU7\|G7KRU7_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AES82118.1}

Sequence

Transcript Sequence

>Glyur001263s00024666.1
ATGAGGGAAGTGACTTGTTTGGCAGAGAGAGTTGTGATTCTACTGAAGGATTTTTGCCACGGTCGGATTCAGGTTAAGCAGATACAAGCGCAACTCATCCTTCACAACCTTCAATCACACACCACCATTGCGTACCACTTCATATCCGCATGCCAATCCCACGGCCTTCTCACCTCAGCTTCTCTTCTCTTCACTCTCTTCGTTCCAAGACCCCACATTTTCATTTACAACTCTCTCATCAGAGCCTTCTCCCATTCCCACACCCTCACCAACACCCCTCTCGCATTATACTCCCACATGCACCGCGCCAACATCCTCCCCAACAACTTCACCTTCCCTTTCCTCTTCAAATCCCTCTCCGATTCCCGCCAACACCTTCAATCCCAATGCGTCTTCACCCACGTCATCAAACTCGGTCACCTCAACGATGTNTACGTCAANAACTCNCTCCTCGATGTCTATGCTTCGTGTGGCCACGTGGCACNGTGTCGANAACTGTTCGATGAAATGCCTCACAGGGATGTTGTGTCGTGGACGGTTCTGATCATGGGTTACCGCAATGCAGGGCAATACGACGACGCGTTGCTTGTGTTTGAACAGATGCAGTATGCGGGTGTGGTCCCCAACAGGGTGACAATGGTGAATGCCTTGGCTGCTTGTGCGAACTCTGGTGCTGTTGAAATGGGGACTTGGATACATGACATGATAAGGAGGAATGGGTGGGAATTGGATGTGATATTGGGGACNGCGTTGATTGATATGTATGCAAAGTGTGGGAGAGTGGAAGATGGGGTGAGGGTTTTCAATAGCATGAGGGAAAAGAATGTGTTTACTTGGAATGCGGTTATAAAAGGGATGGCTTTGGCTAAGAGCGGGGATGAGGCTATTTGGTACTTTAACAGAATGGAGGAGGGTGGTGTTAGACCTGATGGAGTGACTTTGGTTGCTGTTCTTTCTGCGTGCAGTCACTCGGGTTTGGTGGATATGGGTAGAAGGATCTTTGGTTTCTTGATTGGTGGCAAGTATGGGTTTTCTCCCAATGTCAAACACTATGCTTGTATGGTTGACCTCTTGGCTCGTTCTGGGAGTTTGCATGAGGCTTTTGAGATCATGAGATGTATGCCTTTTGAACCGAGCAAGGCCATGTGGGGGTCCTTGTTGGCTGGTTCCAAATCTCGGGGTGATTTGGAATTTGCTGAGTTTGCGGCTAGGAAACTAGTTGAATTGGAGCCGGGTAACACTGCCTACTATGTTCATCTGTCGAATCTTTATGCAGAGATGGGAAGATGGAGCGATGTTGAGAAAGTAAGGGGAATGATGAAAGATAGGGAACTGATCAAGGACTTGGGGTGTAGCTCTGTGGAGGTTGAACACCAAAGGCATGTTGGCGAACTTTTGGCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01263	60950	62353	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001263s00024666.1	PF13812.1	PPR_3	74	107	0.058
Glyur001263s00024666.1	PF01535.15	PPR	148	173	0.021
Glyur001263s00024666.1	PF13041.1	PPR_2	174	221	1.70E-08
Glyur001263s00024666.1	PF13041.1	PPR_2	274	322	8.90E-09
Glyur001263s00024666.1	PF13812.1	PPR_3	349	374	0.042

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.109
SRR1783600	control	2.142
SRR1783602	moderate drought stress	4.661
SRR1811619	moderate drought stress	4.698

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.486
DRR006520	Root Summer glycyrrhizin high producing strain	5.228
DRR006521	Root Winter glycyrrhizin high producing strain	1.144
DRR006522	Root Winter glycyrrhizin high producing strain	1.007
DRR006523	Root Summer glycyrrhizin low producing strain	13.020
DRR006524	Root Summer glycyrrhizin low producing strain	13.169
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.580
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.379

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.612
SRR2868004	Drought Stress (root)	4.538
SRR2967015	Control (root)	3.328

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.010
SRR9715740	Leaf	1.683
SRR9715741	Leaf	0.610
SRR9715739	Root	5.926
SRR9715742	Root	6.007
SRR9715743	Root	5.993

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.450
SRR8749028	MeJA induced 9h	2.734
SRR8749029	MeJA induced 9h	1.407
SRR8749030	Uninduced	0.430
SRR8749031	Uninduced	0.044
SRR8749032	Uninduced	0.234

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.339
SRR8400027	Control - Root	5.650