Gene detail

Gene detail information of Glyur001263s00024665

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27490.2	2.00E-85	dephospho-CoA kinase family
NR	XP_004494358.1	2.85E-147	PREDICTED: dephospho-CoA kinase-like [Cicer arietinum]
COG	NP_470934.1	8.00E-54	dephospho-CoA kinase [Listeria innocua Clip11262]
Swissprot	tr\|Q9ZQH0\|COAE_ARATH	2.00E-116	Dephospho-CoA kinase
trEMBL	tr\|G7ISC8\|G7ISC8_MEDTR	2.00E-144	Dephospho-CoA kinase {ECO:0000313\|EMBL:AES63861.1}

Sequence

Transcript Sequence

>Glyur001263s00024665.1
AAAAAAATAATACAGAAAATAATAATAATAATAATAATAATAATAATAAATAAAGAAAATGCGCATCCGGGGAATCGAACCCCGGTCAGTACCGTGGGAGGGTACTATGATACCACTACACCAGATGCGCTTGNTTGTTGACTGTAGTCTGTCACTTAATATTTTAGTGACGTCATCAGGGTAGTTGGACTTCGTAGCTGAAAACGCGCAGAGAGAGATTGATCAANGAGAAGGGGGAAATCAATGAGGATCGTTGGACTGACGGGTGGAATAGCGTGTGGGAAGAGCACCGTTTCCAATCTATTCAAGGATCATGGAATCCCCGTTGTCGACGCTGACGTCGTCGCTCGCGATGTGTTGAGGAAAGGGAGCGGTGGGTGGAAGAAAGTTGTTGAGGCGTTCGGGGAGGAAATTCTACTCGACAATGGCGAAGTCAACAGACCCAGGCTTGGCCAAATTGTTTTCGCCGATCCCGATAAGCGTCAATTCCTCAATCGATTGCTGGCTCCTTATATATCCTCTGGGATCTTTTGGGAAGTGGTGAAGCTGTGGTTGAAAGGTTACAAGGTCATTGTTCTGGATGTCCCTCTGTTATTTGAGGCCAAGATGGACAGGTTCACGAAGCCCATTATTGTTGTGTGGGTTGATCCCGAAACACAGATTCAGAGGCTCTTGGCCAGAGACAAGTCCGGTGAAGAGGATGCTAGGAACAGGGTTAATGCTCAGATGCCACTGGATGTTAAGAAGGGTAAAGCTGATATAGTCATTGATAACACTGGTTCACTGGATGACCTGAATGCACAGTTTCAGAAGGTCCTTGNTGGTGTCACTAGACCCTTGACATGGCGTGAGTTTTGGCTTTCTAGGCAGGGAGTGTTCATCATTCTTGCTTCACTCACCTCAGGTGTTGTTTTATGTACCAAGGCATTTAACAACTACGGTTCATAGCTACTTGCCTTATATCCTGATTTGTTAATAATGTATACCATCTAAAGCATAGCCATAAACCCTTAAGTGCTTTTCTGTGGAGTGCTCCTTTTATTGCTTTTTGTGTTGTTCTCTTAATGGTTAAGTACTGAATAGTGAACCTATNGGGTGGCTAATATTAGCCAGTCCTGAAGTTACCCTGTGGTTGGTCGAAATAGAGATGGAATCTTGTTTGTTTTCTGCCTCTTTTGACGGATTCTGCCTCCATTTGGTGACCGTGGAAAGGGCATTTGCAATGCATCTATCGTTTTGTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01263	59417	60900	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00859	coaE	EC:2.7.1.24	Pantothenate and CoA biosynthesis	map00770

Gene Ontology

biological_process
GO:0015937 coenzyme A biosynthetic process

molecular_function

GO:0004140 dephospho-CoA kinase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001263s00024665.1	PF01121.15	CoaE	3	182	1.30E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.498
SRR1783600	control	26.607
SRR1783602	moderate drought stress	21.697
SRR1811619	moderate drought stress	21.525

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.194
DRR006520	Root Summer glycyrrhizin high producing strain	41.991
DRR006521	Root Winter glycyrrhizin high producing strain	15.278
DRR006522	Root Winter glycyrrhizin high producing strain	15.070
DRR006523	Root Summer glycyrrhizin low producing strain	57.740
DRR006524	Root Summer glycyrrhizin low producing strain	57.509
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.200
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.059

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	131.615
SRR2868004	Drought Stress (root)	157.769
SRR2967015	Control (root)	130.983

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	51.770
SRR9715740	Leaf	46.615
SRR9715741	Leaf	60.013
SRR9715739	Root	83.189
SRR9715742	Root	55.537
SRR9715743	Root	60.283

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.804
SRR8749028	MeJA induced 9h	50.409
SRR8749029	MeJA induced 9h	41.765
SRR8749030	Uninduced	61.760
SRR8749031	Uninduced	36.771
SRR8749032	Uninduced	40.603

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	101.538
SRR8400027	Control - Root	109.054