Gene detail information of Glyur001263s00024658 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47770.1 | 4.00E-32 | TSPO(outer membrane tryptophan-rich sensory protein)-related |
| NR | XP_004494367.1 | 6.75E-72 | PREDICTED: translocator protein homolog [Cicer arietinum] |
| COG | YP_003405257.1 | 2.00E-12 | TspO and MBR-like protein [Haloterrigena turkmenica DSM 5511] |
| Swissprot | tr|O82245|TSPO_ARATH | 7.00E-49 | Translocator protein homolog |
| trEMBL | tr|I1JQL0|I1JQL0_SOYBN | 2.00E-69 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G37140.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01263 | 28243 | 28872 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001263s00024658.1 | PF03073.10 | TspO_MBR | 72 | 207 | 1.80E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.323 |
| SRR1783600 | control | 3.475 |
| SRR1783602 | moderate drought stress | 2.171 |
| SRR1811619 | moderate drought stress | 2.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 93.554 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 91.725 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 494.302 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 460.773 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 156.256 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 158.230 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.003 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.935 |
| SRR2868004 | Drought Stress (root) | 20.064 |
| SRR2967015 | Control (root) | 17.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 38.100 |
| SRR9715740 | Leaf | 17.364 |
| SRR9715741 | Leaf | 25.846 |
| SRR9715739 | Root | 119.495 |
| SRR9715742 | Root | 102.062 |
| SRR9715743 | Root | 103.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.686 |
| SRR8749028 | MeJA induced 9h | 41.147 |
| SRR8749029 | MeJA induced 9h | 27.182 |
| SRR8749030 | Uninduced | 8.460 |
| SRR8749031 | Uninduced | 4.941 |
| SRR8749032 | Uninduced | 11.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 58.405 |
| SRR8400027 | Control - Root | 22.832 |