Gene detail

Gene detail information of Glyur001263s00024657

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G02500.1	UDP-xylosyltransferase 2
NR	XP_003554517.1	PREDICTED: putative glycosyltransferase 2-like [Glycine max]
Swissprot	tr\|Q9LZJ3\|XXT1_ARATH	Xyloglucan 6-xylosyltransferase 1
trEMBL	tr\|I1NB50\|I1NB50_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G39760.1}

Sequence

Transcript Sequence

>Glyur001263s00024657.1
ATGTTAGAGAAGTGTCTGGGAGCTCAAAGGGCTAGAAGATTCCAGAGATTTCTCAGCCATTGNAAGGTCACAATCCTCTGTCTCTTCCTCACCATCGTTGTCCTGCGCGGCACCATCGGCGCCGGCAAGTTCGGCACGCCGGAACAGGATTTCGTCGACATTCGCAATCACTTCTACTCTCGCAAACTACCCGAGCCTCACCGCCTCCTCGGGGAGCTTCATTCTACGACGTCGTCTTCCTCTTCCTCTGGTTCCGATAGTTCTACTTCAACCACCAATTACAATGCCTTNGACATCAACACCATATTGGTCGATGAAGAAGAACAAGAACATGAACAAGAACGGGACCGTGCGCACGAGCCTTATCGTCTCGGACCCAAAATAACGGATTGGGATGAACAAAGATCGAGGTGGCTTCGTGAAAACCCCAATTACCATAATTTCATTCGACCCGATAAGCCTCGAGTTCTTCTTGTAACCGGGTCGTCGCCGAAACCCTGTGAGAACCCCGTCGGTGATCATTACCTGTTGAAGTCTATTAAGAACAAGATTGATTATTGTCGTTTGCATGGGATTGAGGTTTTTTACAACATGGCACTCCTCGATGCTGAAATGGCTGGGTTCTGGGCAAAGCTTCCTTTGATTCGTAAGCTTCTATTGTCCCACCCAGAAGTGGAATTCTTATGGTGGATGGATAGTGATGCCATGTTCACCGACATGGCCTTTGAAGTGCCGTGGGAGAGGTATAAAGACTCTAACTTGGTGATGCATGGGTGGAAAGAGATGGTGTATGATGAGAAGAATTGGATTGGGTTGAACACTGGGAGCTTTCTGTTGAGGAACTGTCAGTGGTCGTTGGATATTCTTGATGCATGGGCACCAATGGGGCCAAAAGGGAANGTTAGGGATGAGGCTGGGAAAATACTCACGCGTGAACTCAAGGGTAGGCCTGTTTTTGAAGCGGATGATCAATCAGCAATGGTTTATTTGCTTGCTAAGGAGAGGGAAAATTGGGGTGATAAGGTTTATCTTGAGAATGGTTATTACTTGCATGGTTATTGGGGTATTTTGGTGGATAGGTATGAGGAGATGGTTGAGAATTACCACCCTGGTCTTGGTGACCATAGGTGGCCTTTGGTGACTCATTTTGTGGGTTGCAAGCCTTGTGGGAAGTTTGGGGATTACCCGGTTGAGAGGTGCTTGAAGCAGATGGATAGGGCTTTCAATTTTGGGGATAACCAGATACTGCAGATCTATGGCTTCACGCACAAGTCATTGGCTAGTAGCNGGGTTAAGAGAATACGGGATGAGACTAGTAATCCTCTTGAGGTTAAAGATGAACTTGGCTTGCTTCATCCAGCTTTTAAAGCTGTCGAGGTATCATCATCCTCTAGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01263	24896	26293	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT34

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0016758 transferase activity, transferring hexosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001263s00024657.1	PF05637.7	Glyco_transf_34	153	392	3.30E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.486
SRR1783600	control	23.590
SRR1783602	moderate drought stress	19.380
SRR1811619	moderate drought stress	19.834

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.103
DRR006520	Root Summer glycyrrhizin high producing strain	31.019
DRR006521	Root Winter glycyrrhizin high producing strain	28.092
DRR006522	Root Winter glycyrrhizin high producing strain	28.114
DRR006523	Root Summer glycyrrhizin low producing strain	77.967
DRR006524	Root Summer glycyrrhizin low producing strain	77.275
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.859
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.879

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.442
SRR2868004	Drought Stress (root)	17.103
SRR2967015	Control (root)	20.763

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.247
SRR9715740	Leaf	35.624
SRR9715741	Leaf	40.970
SRR9715739	Root	33.866
SRR9715742	Root	59.614
SRR9715743	Root	55.680

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.903
SRR8749028	MeJA induced 9h	64.743
SRR8749029	MeJA induced 9h	46.411
SRR8749030	Uninduced	78.729
SRR8749031	Uninduced	63.907
SRR8749032	Uninduced	37.751

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.571
SRR8400027	Control - Root	21.463