Gene detail

Gene detail information of Glyur001263s00024656

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02880.3	1.00E-102	thiamin pyrophosphokinase1
NR	NP_001241238.1	2.83E-165	uncharacterized protein LOC100795320 [Glycine max]
COG	YP_001181117.1	4.00E-14	thiamine pyrophosphokinase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|B9DGU7\|TPK1_ARATH	2.00E-128	Thiamine pyrophosphokinase 1
trEMBL	tr\|K7KGB3\|K7KGB3_SOYBN	7.00E-166	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G37160.2}

Sequence

Transcript Sequence

>Glyur001263s00024656.1
CGACGACTTTGGGAAGTAGAGAAATAGAGGAAGCAACGCAACAGCAACCGCGCAACAGGGGGTTTGGGAAGAAGCATATTTTCGTTTGTGAGAACAGAAGATGGAGTTGATGTGTCATTGTTCAACCTTCCTTCTTCCGCCGGAGAACCCCAACAACGCCGCTTCTTCTATTTCTCCAACATACGCTCTTGTTATTCTCAACCAACGTCTCCCCAGATTCGCTCCTCTGCTTTGGGACCACGCACAGCTACGAGTCTGCGCCGACGGAGGCGCCAATCGTGTGTATGATGAAATGCCCCTTTTCTTCCCTCANCAACAACCTTCCCATGTTCGCACCAGGTACAAGCCTGATGCAATCAAAGGTGACATGGATTCAATCAGGACAGACGTACTTGAATTCTATAGAAAGATGGGAACTAAGATAATTGATGAGTCTGATGATCAGGACACCACGGATTTACACAAATGTGTAGCATACATANGTGACCTCACACCAAATGTCGATAAATCACCTCTATGCATTCTTGTTGCTGGAGCACTTGGTGGGAGATTTGACCATGAGATTGGAAATATTAATGTGCTGTGCCGGTTCTCCACCACACGAATTATTCTTCTATCTGATGATTGCCTCATTTACCTTCTTCCAAAGGATCACTCTCATAAGATCCTTGTTCAATCTTCTGTCGAGGGTCCGCATTGTGGACTCATTCCCATCGGGATGCCATCTGGAAGTTCTACAACCACAGGACTCCAGTGGGACCTCAATAACACGGAGATGAGATTTGGTGGTTTAATAAGCACATCAAATATTGTAAAAGGAGATATAGTGACGGTACAGTCTGATTCAGATCTTCTTTGGACTATTTCTATCAAGAAGCCCTAGGTTTTACATGTTGCGTACTGCACTGATTTTTTCAGATCTGCCATGTTATGCAGATGGATTTTATATTCCATTTAAAGGGGTCTTTTCTGCTGACCTTTTTTTCCATTTACTGTGTGAATTATGGGAGGGTGGAGGGGAATTATTCATTAATTTGGGAATTCTATTCCTAATAACCAATAAGCCTGGGAAGTTCAGTTTCCAAACAAGTTACTTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01263	19460	22309	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00949	thiN, TPK1, THI80	EC:2.7.6.2	Thiamine metabolism	map00730

Gene Ontology

biological_process

GO:0006772 thiamine metabolic process

GO:0009229 thiamine diphosphate biosynthetic process

molecular_function

GO:0004788 thiamine diphosphokinase activity

GO:0005524 ATP binding

GO:0030975 thiamine binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001263s00024656.1	PF04263.11	TPK_catalytic	34	171	1.60E-31
Glyur001263s00024656.1	PF04265.9	TPK_B1_binding	185	251	4.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.319
SRR1783600	control	14.576
SRR1783602	moderate drought stress	13.881
SRR1811619	moderate drought stress	13.985

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.516
DRR006520	Root Summer glycyrrhizin high producing strain	9.647
DRR006521	Root Winter glycyrrhizin high producing strain	36.073
DRR006522	Root Winter glycyrrhizin high producing strain	35.233
DRR006523	Root Summer glycyrrhizin low producing strain	24.487
DRR006524	Root Summer glycyrrhizin low producing strain	24.306
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.609
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.165

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.483
SRR2868004	Drought Stress (root)	45.797
SRR2967015	Control (root)	41.084

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.256
SRR9715740	Leaf	39.496
SRR9715741	Leaf	47.081
SRR9715739	Root	14.017
SRR9715742	Root	21.683
SRR9715743	Root	19.903

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.401
SRR8749028	MeJA induced 9h	39.286
SRR8749029	MeJA induced 9h	45.135
SRR8749030	Uninduced	50.459
SRR8749031	Uninduced	58.846
SRR8749032	Uninduced	44.801

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.098
SRR8400027	Control - Root	29.690