Gene detail

Gene detail information of Glyur001263s00024655

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27720.1	2.00E-48	Small nuclear ribonucleoprotein family protein
NR	XP_004494370.1	9.13E-76	PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like [Cicer arietinum]
Swissprot	tr\|Q43582\|LSM4_TOBAC	9.00E-79	Probable U6 snRNA-associated Sm-like protein LSm4
trEMBL	tr\|A0A067EPS5\|A0A067EPS5_CITSI	8.00E-76	Uncharacterized protein {ECO:0000313\|EMBL:KDO53167.1}

Sequence

Transcript Sequence

>Glyur001263s00024655.1
AAAAAAGAGATCAACGGTGAAAGCGAGCGATCATAATAATCATAGAGGAGAGGGTGTAGAAGAACACTCCCTCTTTCCCTCCTCTGCCTCCTCTTCTTCCACTTTCGGTCTCTTCAAACGCACAACTTCATCGACGACACTCCCACAAACCCNCAACATGCTTCCTCTTTCCCTTCTCAAGACTGCTCAAGGCCACCCTATGTTGGTGGAACTGAAAAATGGAGAGACTTATAACGGCCATTTGGTTAATTGTGATACATGGATGAACATCCATCTCCGAGAAGTCATCTGTACCTCTAAAGACGGAGATAGATTTTGGCGGATGCCCGAATGCTACATACGAGGCAATACAATTAAGTACCTTAGAGTTCCTGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAGAGCCGTACAGATCGCAAACCACCTGGTGTGGGACGTGGGAGGGGAAGAGGTAGGGAGGATGGTGCTGGTGGACGCCAAACAAAGGGAATTGGGCGTGGTCTTGATGATGGTGGNGCTAAGGGAGCTGGAGGCCGAGGCAAGGGTGGCCTAGGTGGAAAGCCTGGTGGAAGCAGAGGTGCAGGGCGAGGCAGAGGTTGATTTGAACACAAGTAATGTGATGTGAACTACTTCAGATGGGCGAGTTTGCTACTTTTGGAGGCATTGATGCGTACCAGCAGCAGCCGCCCTGTTTCCTGTGCATCCTTGGATTTTAGCTTTCCAGTATTTTTCTTGTGTTTATGGTAACAAAAATGTTGATGCTATTATATTACTCAGAGGAAGGCTTCTATGTCTGCATCACTTTCTAATACCTTCCCAATGGCAAACTTGATTTTTTTCTTTCCCTGCAGTGAGAAGTAATGGATGGATCAATGTGTTAGATTCCCAACCGTGATATATTTACTATTTAGGAATATGTTCCTTTGGCAATTGTACATGAAACGTTTGAACTCATGTTCTAGTAATTTCCAAAGCAGTTAGAGATTATTTGTTATTTTTTTCCTCATGTTGAATGTTGATTCTTGCCACTACTGAAGGCTGGAGTAAGCATGAAACTGAAAGTTGCTAGCAGAGTTTAGCTGTGTATGCAGTTTGATTCTCTNGTGTTTAGGGGAAGAAGAGGGAGGGTACTGCCTTCAGTTTCGATTGATTTTCAGAACTGATTGATGTTTTTCCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01263	13345	16608	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001263s00024655.1	PF01423.17	LSM	6	69	4.70E-15
Glyur001263s00024655.2	PF01423.17	LSM	6	69	4.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.091
SRR1783600	control	26.176
SRR1783602	moderate drought stress	39.016
SRR1811619	moderate drought stress	39.130

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.930
DRR006520	Root Summer glycyrrhizin high producing strain	41.107
DRR006521	Root Winter glycyrrhizin high producing strain	66.252
DRR006522	Root Winter glycyrrhizin high producing strain	67.218
DRR006523	Root Summer glycyrrhizin low producing strain	48.848
DRR006524	Root Summer glycyrrhizin low producing strain	47.462
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.434
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.942

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.756
SRR2868004	Drought Stress (root)	32.442
SRR2967015	Control (root)	42.744

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.865
SRR9715740	Leaf	11.458
SRR9715741	Leaf	11.428
SRR9715739	Root	55.980
SRR9715742	Root	31.711
SRR9715743	Root	37.223

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.267
SRR8749028	MeJA induced 9h	16.792
SRR8749029	MeJA induced 9h	20.018
SRR8749030	Uninduced	6.851
SRR8749031	Uninduced	3.495
SRR8749032	Uninduced	7.598

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	58.465
SRR8400027	Control - Root	68.649