Gene detail information of Glyur001263s00024653 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02450.2 | 4.00E-33 | HSP20-like chaperones superfamily protein |
| NR | NP_001241395.1 | 1.18E-91 | uncharacterized protein LOC100796372 [Glycine max] |
| Swissprot | tr|P0C8Z0|Y8359_ORYSI | 2.00E-59 | Uncharacterized protein OsI_027940 |
| trEMBL | tr|C6TIY1|C6TIY1_SOYBN | 4.00E-92 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU22871.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01263 | 4417 | 7839 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001263s00024653.1 | PF04969.11 | CS | 54 | 129 | 3.40E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 101.684 |
| SRR1783600 | control | 101.658 |
| SRR1783602 | moderate drought stress | 83.349 |
| SRR1811619 | moderate drought stress | 83.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 238.932 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 236.606 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 253.043 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 245.926 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 162.809 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 162.829 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 72.060 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 71.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 528.534 |
| SRR2868004 | Drought Stress (root) | 371.451 |
| SRR2967015 | Control (root) | 354.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 211.960 |
| SRR9715740 | Leaf | 233.935 |
| SRR9715741 | Leaf | 229.192 |
| SRR9715739 | Root | 73.952 |
| SRR9715742 | Root | 177.875 |
| SRR9715743 | Root | 154.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 435.490 |
| SRR8749028 | MeJA induced 9h | 263.602 |
| SRR8749029 | MeJA induced 9h | 314.558 |
| SRR8749030 | Uninduced | 162.537 |
| SRR8749031 | Uninduced | 155.616 |
| SRR8749032 | Uninduced | 158.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 476.643 |
| SRR8400027 | Control - Root | 423.055 |