Gene detail information of Glyur001260s00039857 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22970.1 | 4.00E-81 | Protein of unknown function (DUF506) |
| NR | XP_004498009.1 | 0 | PREDICTED: uncharacterized protein LOC101505674 [Cicer arietinum] |
| trEMBL | tr|A0A072VG82|A0A072VG82_MEDTR | 5.00E-175 | DUF506 family protein {ECO:0000313|EMBL:KEH41039.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01260 | 27932 | 30525 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001260s00039857.1 | PF04720.7 | DUF506 | 65 | 279 | 6.10E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 61.003 |
| SRR1783600 | control | 61.298 |
| SRR1783602 | moderate drought stress | 116.484 |
| SRR1811619 | moderate drought stress | 113.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 108.690 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 106.396 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.979 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.006 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 63.703 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 64.001 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.358 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 56.336 |
| SRR2868004 | Drought Stress (root) | 73.850 |
| SRR2967015 | Control (root) | 59.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.234 |
| SRR9715740 | Leaf | 23.918 |
| SRR9715741 | Leaf | 9.007 |
| SRR9715739 | Root | 40.518 |
| SRR9715742 | Root | 39.619 |
| SRR9715743 | Root | 41.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.032 |
| SRR8749028 | MeJA induced 9h | 0.620 |
| SRR8749029 | MeJA induced 9h | 0.331 |
| SRR8749030 | Uninduced | 1.387 |
| SRR8749031 | Uninduced | 0.987 |
| SRR8749032 | Uninduced | 1.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 54.710 |
| SRR8400027 | Control - Root | 53.607 |