Gene detail information of Glyur001260s00039856 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43640.2 | 1.00E-11 | Signal recognition particle, SRP9/SRP14 subunit |
| NR | XP_004506610.1 | 1.50E-13 | PREDICTED: signal recognition particle 14 kDa protein-like [Cicer arietinum] |
| Swissprot | tr|O04421|SRP14_ARATH | 9.00E-15 | Signal recognition particle 14 kDa protein |
| trEMBL | tr|A0A0A0LYE0|A0A0A0LYE0_CUCSA | 6.00E-14 | Uncharacterized protein {ECO:0000313|EMBL:KGN65867.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01260 | 7 | 2167 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001260s00039856.1 | PF02290.10 | SRP14 | 35 | 63 | 7.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.339 |
| SRR1783600 | control | 3.959 |
| SRR1783602 | moderate drought stress | 3.350 |
| SRR1811619 | moderate drought stress | 3.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.228 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.194 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.146 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.522 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.698 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.558 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.602 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.682 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.423 |
| SRR2868004 | Drought Stress (root) | 3.937 |
| SRR2967015 | Control (root) | 3.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.592 |
| SRR9715740 | Leaf | 2.102 |
| SRR9715741 | Leaf | 1.614 |
| SRR9715739 | Root | 0.581 |
| SRR9715742 | Root | 1.679 |
| SRR9715743 | Root | 0.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.720 |
| SRR8749028 | MeJA induced 9h | 3.524 |
| SRR8749029 | MeJA induced 9h | 4.601 |
| SRR8749030 | Uninduced | 2.290 |
| SRR8749031 | Uninduced | 1.625 |
| SRR8749032 | Uninduced | 1.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.108 |
| SRR8400027 | Control - Root | 4.750 |