Gene detail

Gene detail information of Glyur001259s00024418

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66840.1	3.00E-63	SAP domain-containing protein
NR	XP_003611785.1	0	Zinc finger CCCH domain-containing protein [Medicago truncatula]
Swissprot	tr\|Q338N2\|C3H62_ORYSJ	7.00E-53	Zinc finger CCCH domain-containing protein 62
trEMBL	tr\|G7K818\|G7K818_MEDTR	0	Zinc finger CCCH domain protein {ECO:0000313\|EMBL:AES94743.1}

Sequence

Transcript Sequence

>Glyur001259s00024418.1
ATGGATAAGGGGAGAGGAAAGAGCGTAGCGATTGTTCTCTCCTCTGAAGAAGAAGATTACGATGATGATCAGGAAGAAGAAGAAGATTACGATGATGATCAGGAAGATGAAGAAGAGGAAGAGGACGACGGCGAAGAACAATACAGAGATGGCGATGGAGCGTCCGAATCGGATGACNGTGATATTGATGATAAATCCCTCTCCGACAAAGTTGTCGCTCTCCTTCAAGGAAGAAATGATATAGAATCCTTGAAATTGAACGAATGCAAAGCGTATCTACGGAAACATGGTCTGAGGATTGCAGGAAATAGAGCGGTTTGTATTGCGAGGATAAAAGAGCACTGGAGGTTAAAACATGGATGTGGGTACACTCTGTATCCGAGATCGTCCTTCAACATTAATTGCACTGGTGATGTATGCATGGGAGATGTGGTTCTGTTCAGACAGAAGGTTTATGAAAAGTTTGACAAAGTGATTCGGCATGGAAGAGTTCTAGGAAACAGAACTGTTGCTGGGAGGGTTGTGAAGGAAAGCTACGGTGCAGCTAAACAACAACACACCTTCACTGTTGAGGTGTTGTGGAGTAGTGGGGTTATGAAGTTGCCTCCACTTNTTCCTTTGCTTGTAAAGGGACGTAATCTCTACAAACAGAAAACTTACAGACAGAGATGGAAAAATGAAGCTGATAGAGTTCAAGTGCTTTCCGAGAAGCACAGACGTGGTGCAGCAGCGAGGTGTGTGAGAGCATTGAAGCAGAAAAGGAAAAGCTGCTATGCAAATGGATCTAAGGGTAGTTTTGGACCTGGTTCAAAGCGGCAGCATGAAATCCAGAATACAAAACGATTGAAAAAAGGAAGATCCTATGAACCAAATAAGGTTAGGCACGTTGATGGCTCCAGTAGAGCAAACGACTATCAACCTCAAGAGGCTACTTCAACAACATGGAAGGAGAGTGCATCTTCAAGAGCCTTCAGATCTGAAAGGGGAAGACACAAGTCTGCTGCATTTGACCATTATCAAGTTCCAGTTTATCCATTATATGCTAGTAATCGACAAATTCCATATCAGTGTCAAGTGAATTCTCAAAGCAGGAATGAACCAAGCGAAATCTTTTATCACGAGAGAGGCCTAAATCCAAATATTACAGGATTCCCACCTTTCAGGCCTCGTGTGGGTGAATTCACATCTAGAGCACATGTATTCAGTGATAATCATCATGCCCACACAAACCGATACAACTTTGAAATGAAGAATTTAAATGCAGAACATATTGACAGGCCATTATACGTGTCTCCAAGAGACAGGTATGGATGGAGAAAGTAAGTATATGATATGATGTTATATTTTTCATTAGGAAGACTAGGCCTACGGACAGTTTGGTTTCACCTTTTAACAGTGGCATGCCCTGGGCTCTCCACTTNCGCATTCCACTTTGGGCTAGTGTTCATGGTATTTTTGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01259	49946	53526	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001259s00024418.1	PF02037.22	SAP	82	115	8.30E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.625
SRR1783600	control	3.399
SRR1783602	moderate drought stress	5.271
SRR1811619	moderate drought stress	5.389

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.730
DRR006520	Root Summer glycyrrhizin high producing strain	7.706
DRR006521	Root Winter glycyrrhizin high producing strain	12.179
DRR006522	Root Winter glycyrrhizin high producing strain	11.562
DRR006523	Root Summer glycyrrhizin low producing strain	5.737
DRR006524	Root Summer glycyrrhizin low producing strain	5.939
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.216
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.124

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.635
SRR2868004	Drought Stress (root)	11.922
SRR2967015	Control (root)	12.436

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.629
SRR9715740	Leaf	4.030
SRR9715741	Leaf	4.408
SRR9715739	Root	0.167
SRR9715742	Root	1.457
SRR9715743	Root	1.430

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.329
SRR8749028	MeJA induced 9h	19.002
SRR8749029	MeJA induced 9h	16.368
SRR8749030	Uninduced	27.124
SRR8749031	Uninduced	28.968
SRR8749032	Uninduced	17.648

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.613
SRR8400027	Control - Root	13.601