Gene detail

Gene detail information of Glyur001259s00024417

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50560.1	9.00E-94	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_007156822.1	3.65E-144	hypothetical protein PHAVU_002G020600g [Phaseolus vulgaris]
COG	YP_645735.1	1.00E-51	short-chain dehydrogenase/reductase SDR [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|F4JZN6\|TC10B_ARATH	9.00E-09	3-dehydrosphinganine reductase TSC10B
trEMBL	tr\|V7CIT3\|V7CIT3_PHAVU	1.00E-144	Uncharacterized protein {ECO:0000313\|EMBL:ESW28816.1}

Sequence

Transcript Sequence

>Glyur001259s00024417.1
ATGATAAGAAGCGTGACAAGCTCAACCTCCTCACGGGGCAATATTGCTGCTATAGTCGGGGTTGGACCCAAGCTGGGCCGATCCATCGCCCGCAGGTTCGCTCACGAAGGCTACACCGTTGCCATCCTCGCTCAGAGATTGTCAAGAATAGCGGAAGAGATAGCGAGGGAAGAGAAATCACAGGTGTTTGCAATACGNATTGACTGCTCCGATTCCAAGAGCGTGAGGGATGCATTCGAAGGAGTACTCTCCCTTGGATTCGTGGAGGTTCTTGTTTACAATGCTTACCAGCCCCTCCCTCCCAACCCAACCTCCTTCCAACATCTCCACCTCCACTCCTTCCAGAATTCCCTTGCTGTTTCCACCGTCGGCTCCTTCCATTGCGCTCAACAGGTGATCCCGGGCATGGTGGAAAGAGGAAAGGGCACGATTCTCTTCACGGGCTGTTCTGCTTCGCTGAATGGCATTGCCGGATACTCCCAACTATGCTGTGGGAAATTCGCGTTGAGAGCACTAGCACAATGCCTAGCCAGGGAATTTCAACCCCAAGGAGTGCACATAGCACATNTCATCATTGACGGTGTTGTTGGCCCACCCAGCAGGCGAAAAACTTCAACAGTTGGGGAGCAAAGTAATGGTGGATCAGGAGATGAGGGGAGAATGGACCCAGACGCACTGGCTCAAACCTACTGGCACTTACACGTTCAAGACCGGACCACTTGGACCCAGGAGATTGACCTCTGTTCCTCCACTGCNAGATTCTTCTAGCTAGCTAGCTGGCTTAGCTATACTTCTTCACCTTCCCTTCCCTATGTATTGTTAATCTCTCATTTGTCTCTCAATCATTCTCTACCACCTACTCTATTTTTCCACTTAGTCTATCATTTCATCTATGTTAATGTGAGACGGATTTGCTGCACTCAAAGATTTCACACATTCATTGCAATTAGTACATTGAAATCGTTGGTTAAAGATCAGATGACTCACAATTTGATTCTAGTAAATCAAATTCAAAATACAAACTCAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01259	46569	48287	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001259s00024417.1	PF00106.20	adh_short	16	180	2.40E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.107
SRR1783600	control	0.087
SRR1783602	moderate drought stress	0.979
SRR1811619	moderate drought stress	0.953

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.298
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.185

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.470
SRR2868004	Drought Stress (root)	0.279
SRR2967015	Control (root)	0.158

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.314
SRR9715740	Leaf	5.194
SRR9715741	Leaf	2.658
SRR9715739	Root	0.000
SRR9715742	Root	0.129
SRR9715743	Root	0.074

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.407
SRR8749028	MeJA induced 9h	1.230
SRR8749029	MeJA induced 9h	1.685
SRR8749030	Uninduced	1.688
SRR8749031	Uninduced	0.942
SRR8749032	Uninduced	2.781

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.580
SRR8400027	Control - Root	0.481