Gene detail

Gene detail information of Glyur001259s00024414

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50590.1	0	Transducin/WD40 repeat-like superfamily protein
NR	XP_004511953.1	0	PREDICTED: uncharacterized protein LOC101500069 isoform X2 [Cicer arietinum]
COG	YP_003300732.1	5.00E-09	metallophosphoesterase [Thermomonospora curvata DSM 43183]
trEMBL	tr\|G7ZY41\|G7ZY41_MEDTR	0	Vascular protein {ECO:0000313\|EMBL:AES84129.1}

Sequence

Transcript Sequence

>Glyur001259s00024414.1
ATGGAGTGGACGACATTGCAGCATCTTGATCTGCGCCACGTAGGGCGTGGCGTCACACCTCTTCAGCCTCATGCTGCATCCTTCCATCCTCATCAGGCACTCGTTGCCGTCGCTATCGGAACCTACATCGTCGAATTTGATGCATTGACAGGAAGCAAGATTTCTGCTCTTGACATTGGTGCACCTGTTGTCCGCATGTCATATAGTCCTACAAGTGGGCATACTGTGATAGCAATCCTCCAGGACTGTACATTACGATCTTGTGATTTTGACTTAGAGCAAACATGTGTATTGCATTCGCCAGAGAAGAAGACAGAGCAAATTTCTTCTGATACAGAAGTTCATCTGGCAATGACTCCGCTACAACATGTTGCGTTTTTTGGATTCCACAAACGGATGAGTGTTACAGTTGTTGGAACTGTTGAAGGTGGTAGAGCACCCACAAAAATCAAGACAGACTTGAAGAAGCCTATTATGAATCTTGCTTGTCATCCTCGCCTCCCAGTTTTGTATGTTGCTTATGCAGAAGGTTTGATTCGAGCATATAACATTCACACCTATGCTGTTCATTACACACTACAACTTGAAAATACTATAAAGCTTAATGGCGCTGGTGCATTTGCATTTCATCCAACTCTAGAATGGATTTTTGTTGGNGATCGACGTGGTACATTATTGGCGTGGGATGTATCAACCGAGAGGCCTAGTATGATTGGAATAATTCAAGTTGGCTCACAACCCATAACATCAGTTGCTTGGTTACCCACGTTGCGTTTACTCGTAACCCTATCAAGGGATGGAAATATGCAAGTTTGGAAAACACGGGTTACAGTTAATCCTAATAGACCTCAGGCAAATTTCTTTGAGCCTGCTGCAATTGAATCAATTGATATCCCGCATATCCTTTCTCAACAAGGTGGAGAAGCAGTGTATCCATTACCGCGAGTTAAAGCTATAGAAATTCATCCAAAATCTAATTTAGCAGTACTAAATGTAACAACTGGAGACACTTCAAAAAATAAAACCACACATAATAGAGAAAGGAGAAAGCAACTTTTTGCAGTTTTGCAAGGGGCACGGGGATCATCAGCATCTGTTTTAAAAGAAAAATTGTCAGCCTTGGGTTCATCTGGAGTGTTAGCAGATCATCAACTTCAAGCTCAATTACAAGAACATCATCTGAAAGGCCATAGTCATCTCACAATATCAGACATTGCAAGGAAGGCTTTTCTTTACAGTCATTTTATGGAACGCCATACAAAAAGTGCTCCCATATCTCGTTTACCCCTCATCACTGTTCTGGATACCAAGCATCATCTGAAGGACATTCCAGTTGTCCATCCATTTCATTTGGAGCTTAATTTCTTCAATAAAGAGAACCGAGTTCTTCATTATCCTGTCAGGGCTTTCTATTTGGAAGGACCAAATCTTATGGCATATAATCTCTCATCTGGATCGGAGAGTATCTACAAGAAGCTATATAATTCGATTCCTGGGAGTGTGGAGTATCAAGCAAAATACTTGATTTACAGTAAAAAGCAACACCTGTTTCTTGTAGTTTATGAATTTAGTGGCACTACAAATGAGGTTGTGCTTTATCGGGAAAATACTGAAGCAGAGATAGCAAACAGTAAAAGCAGCACAGTGAAAGGTAGAGATGCAGCATTTATTGGTCCCAATGAAAATCAGTTTGCTATTCTCGAAGAAGACAAGACAGGGTTGGCACTATATATTCTACCAGGAGAGCCCTCACAAGAAGCTAAGGAAAATGAAGTTTTTGGAGAAAACCAACCTACAAAAACTAGTGTTGGTTCAGTTCGTGGCCCAACGCCATTTATGTTTGAAACTGAAGTTGATCGGATCTTTTCCACTCCTTTAGATTCAACTTTGATGTTTGCTTCTCATATGAACCAAATTGGGTTAGTAAAGCTCATCCAAGGGTATCGCCTTTCAACTTCAGCTTCTGATGGGCATTATATATCAACCAAGAGCGAGGGCAAAAAGTCAATCAGATCACTCTTATGGGTTGGGCCTGCCCTTCTTTTTTCTACTGCCACTGCAATCAGCATGCTTGGCTGGGATGGAAAAGTGAGGACTATCCTCTCAATTAGTATGCCCCAAGCAGTCTTGGTTGGTGCTTTGAATGATCGATTGCTGCTTGCTAGCCCAACGGAGATAAATCCCAGACAGAAGAAGGGNGTTGAGGTCAAAAGCTGTCTTGTTGGTCTTCTTGAGCCTCTTCTCATTGGATTTGCCACAATGCAACAAAACTTTCAGCAGAAGCTCGACCTATCAGAAATACTATACCAAATAACATCAAGGTTTGACAGCCTGCGCATAACACCAAGGTCTCTGGACATCCTTGCTAGAGGTTCTCCTGTTTGTGGAGATTTAGCTGTGTCATTATCCCAATCAGGTCCACAGTTCACCCAGGTGATGCGGGGTGCCTATTCTGTGAAAGCTCTTCATTTTTCAACCGCTTTATCTGTTTTGAAAGATGAGTTTCTGCGTTCAAGAGATTATCCACGGTGTCCTCCTATATCTAATTTATTTCACAGTTTCAGACAGTTGGGCTATGCCTGTATCAGGTTTGGTCAGTTTGATAGAGCAAAAGAAACCTTTGAAGTTACTGCAGATTACAAAAGCATGCTTGATCTGTTTATATGCCACCTTAATCCTAGCGCCATGAGGCNTCTTGCTCAAAAATTGGAAGAAGAAGGTCTTGACTCGGAATTGAGACGANATTGTGAAAGGATTTTACGAGTTCGATCTACTGGATGGACACAAGGNATATTTGCCAACTTCGCTGCAGAAAGTATGGTTCCTAAAGGACCTGAATGGGGTGGTGGAAACTGGGAAATCAAAACCCCGGCTACTGCAAAGGATATACCTAAGTGGGAGCTTGCTGCAGAGGTGACACCATACATGAGGACTGATGATGCTACCATTCCATCCNTTGTTCTAGATCATATTGGGGTGTATTTAGGCTCAATTAAAGGAAGAGGCAATATTGTAGAGGTAAGGGAAGATAGCTTGGTTAAAGCCCTCACTCCAGCAGGTTATGATATTAAAGCAAATGGTCTTGAAGTATCTTCAGTTAAATCCATGTCTGATCAATTGAAGGGGGTTGATAATTCCCAAGGTAATTCATTAATGGGTCTGGAAAGTCTTAACAAACAGCTTGCTAGTTCCTCTGCTGATGAACAGGCTAAAGCAGCAGAAGAATTTAAGAGATCCATGTATGGTGCTGCTGCTGATGATAGCAGTAGTGATGAGGAAGGAGTATCAAAAACTAAAAAAATACGTGTTAGAATACGAGACAAGCCAATTGATTCTTCTGTGGATGTGAGCAAGATTAAAGAAGCAGCTAGTAAATTTAAACTTAGTCAAGGATTAGCTCCATCAAGGAGCAGGTCGTTAACCAATGTATCCCAAGATCTTGGCCAGATTTTGTCCACGCCACCTGCACCTAGAGGAATGGCTGCTCGTACNGCTTCAACTCCTAGTGACCTTTTTAGCACAAATGCCTTTACTAAACCAGAATCAATTTCACAGCCAACTACTGGGGTTGTAAATAGAGGACCTATTCCAGAGGATTTCTTTCAGAATACAATTCCATCCCTTCAGGTTGCTGCTTCACTGCAACCTACTGGGTCATATCTCTCTAAATTTACTCCAGGNGTTGAAAGCAGCAAGGAAACTGCTAACCAGGCTGCAGTCATGCCCNCATCACAGCAGCAGGCACCAATTTCTACCCAACCTCTTGATCTTAGTATACTTGGAGTACCAAATTCTGCTGATTCAGGAAAGCCTCCACAAACTGGTTCTCCACCATCTTCTGTACGACCTGGACAGGTTCCCCAAGGGGCTGCTGCTTCTGTATGTTTCAAGACTGGACTTGCTCACCTTGAGCTAAATCATCTTTCAGATGCCTTGTCTTGCTTTGATGAAGCTTTTCTCGCATTAGCTAAGGAACAATCTCGTGGAAGTGATATAAAAGCTCAAGCAACAATCTGTGCTCAATACAAGACAGCAGTCACTCTTCTTCAGGAAATTGGACGTTTGCTAAAAGTTCATGGTCCAAGTGCAATCAGTGCAAAAGATGAGATGGCAAGACTTTCACGCCATCTGGGTTCATTGCCTCTTCTGGCTAAGCACAGAATAAATTGCATTCGAACTGCCATAAAACGAAACATGGAGGTGCAAAACTATGCATATTCCAAGCAAATGCTAGAATTACTATTGTCAAAAGCACCTCCAAGCAAGCAGGAGGAATTTAGGAGCCTGATCGACTTGTGTGTTCAGAGAGGTTTGACCAACAAATCCATTGATCCATTGGAAGATCCTTCGCAGTTCTGTGCNGCCACCTTAAGCAGGTTGTCAACCATTGGATATGATGTCTGTGATCTATGTGGAGCCAAATTTTCAGCCGTGACTGCTCCTGGATGCATCATTTGTGGAATGGGAAGCATCAAAAGATCAGATCTCGCAGGGCCAGTTCCTTCTCCATTTGGTTGAGTCCCCTAGATGGTACTTGATTGTAGCGTGCTTTCGATCCCTTGGGAAGCTGTTGTAGGGAGGATATACAGCTGAAGGAAAAGGAGAAAAAAATTCTCACACCGAATCTCGGGATGTTATATAGTTTCTGCATTGTGTTCCCAATTGACCCTTTCTCTGTAATTACCGTAATTACAGAATTTTGTTTTCCAATAATTTT

Protein Sequence

>Glyur001259s00024414.1
MEWTTLQHLDLRHVGRGVTPLQPHAASFHPHQALVAVAIGTYIVEFDALTGSKISALDIGAPVVRMSYSPTSGHTVIAILQDCTLRSCDFDLEQTCVLHSPEKKTEQISSDTEVHLAMTPLQHVAFFGFHKRMSVTVVGTVEGGRAPTKIKTDLKKPIMNLACHPRLPVLYVAYAEGLIRAYNIHTYAVHYTLQLENTIKLNGAGAFAFHPTLEWIFVGDRRGTLLAWDVSTERPSMIGIIQVGSQPITSVAWLPTLRLLVTLSRDGNMQVWKTRVTVNPNRPQANFFEPAAIESIDIPHILSQQGGEAVYPLPRVKAIEIHPKSNLAVLNVTTGDTSKNKTTHNRERRKQLFAVLQGARGSSASVLKEKLSALGSSGVLADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHFMERHTKSAPISRLPLITVLDTKHHLKDIPVVHPFHLELNFFNKENRVLHYPVRAFYLEGPNLMAYNLSSGSESIYKKLYNSIPGSVEYQAKYLIYSKKQHLFLVVYEFSGTTNEVVLYRENTEAEIANSKSSTVKGRDAAFIGPNENQFAILEEDKTGLALYILPGEPSQEAKENEVFGENQPTKTSVGSVRGPTPFMFETEVDRIFSTPLDSTLMFASHMNQIGLVKLIQGYRLSTSASDGHYISTKSEGKKSIRSLLWVGPALLFSTATAISMLGWDGKVRTILSISMPQAVLVGALNDRLLLASPTEINPRQKKGVEVKSCLVGLLEPLLIGFATMQQNFQQKLDLSEILYQITSRFDSLRITPRSLDILARGSPVCGDLAVSLSQSGPQFTQVMRGAYSVKALHFSTALSVLKDEFLRSRDYPRCPPISNLFHSFRQLGYACIRFGQFDRAKETFEVTADYKSMLDLFICHLNPSAMRXLAQKLEEEGLDSELRRXCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPATAKDIPKWELAAEVTPYMRTDDATIPSXVLDHIGVYLGSIKGRGNIVEVREDSLVKALTPAGYDIKANGLEVSSVKSMSDQLKGVDNSQGNSLMGLESLNKQLASSSADEQAKAAEEFKRSMYGAAADDSSSDEEGVSKTKKIRVRIRDKPIDSSVDVSKIKEAASKFKLSQGLAPSRSRSLTNVSQDLGQILSTPPAPRGMAARTASTPSDLFSTNAFTKPESISQPTTGVVNRGPIPEDFFQNTIPSLQVAASLQPTGSYLSKFTPGVESSKETANQAAVMPXSQQQAPISTQPLDLSILGVPNSADSGKPPQTGSPPSSVRPGQVPQGAAASVCFKTGLAHLELNHLSDALSCFDEAFLALAKEQSRGSDIKAQATICAQYKTAVTLLQEIGRLLKVHGPSAISAKDEMARLSRHLGSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLELLLSKAPPSKQEEFRSLIDLCVQRGLTNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSAVTAPGCIICGMGSIKRSDLAGPVPSPFG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01259	29773	44970	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001259s00024414.1	PF00400.27	WD40	244	273	0.00086
Glyur001259s00024414.2	PF00400.27	WD40	244	273	0.00089

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.493
SRR1783600	control	5.452
SRR1783602	moderate drought stress	5.832
SRR1811619	moderate drought stress	5.652

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.682
DRR006520	Root Summer glycyrrhizin high producing strain	4.431
DRR006521	Root Winter glycyrrhizin high producing strain	4.554
DRR006522	Root Winter glycyrrhizin high producing strain	4.303
DRR006523	Root Summer glycyrrhizin low producing strain	5.771
DRR006524	Root Summer glycyrrhizin low producing strain	5.749
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.213
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.327

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.150
SRR2868004	Drought Stress (root)	2.845
SRR2967015	Control (root)	2.083

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.014
SRR9715740	Leaf	3.339
SRR9715741	Leaf	2.817
SRR9715739	Root	0.968
SRR9715742	Root	1.954
SRR9715743	Root	1.583

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.410
SRR8749028	MeJA induced 9h	2.397
SRR8749029	MeJA induced 9h	1.391
SRR8749030	Uninduced	2.465
SRR8749031	Uninduced	0.732
SRR8749032	Uninduced	0.659

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.125
SRR8400027	Control - Root	3.238