Gene detail

Gene detail information of Glyur001258s00037325

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G02230.2	2.00E-68	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	NP_001241637.1	2.86E-140	uncharacterized protein LOC100795391 [Glycine max]
COG	YP_004173930.1	1.00E-16	pyrimidine 5-nucleotidase family protein [Anaerolinea thermophila UNI-1]
trEMBL	tr\|C6TFD5\|C6TFD5_SOYBN	1.00E-140	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G16020.1}

Sequence

Transcript Sequence

>Glyur001258s00037325.1
TGCCTCTGGTTTTTCCTCCCCCTTCACCTTGCATCCTTCAATACCATTGTACTTACTACTATATTCCTCTCTAACCTTTGCTTCTTCACACCCTCTTCCTTCACCCCATTCATTGTTCTGTTTCTGGTTTTCTGCTTGAAATGGAGTATCAGAGACCAAAATATGATTGCCTTCTTTTTGATTTAGATGATACTTNGTATCCACTTAGCTGTGGTATTGCAAAAGCATGTGGTCAAAATATCAAAGACTATATGGTTGAGAAGCTTGGCATAGAGAGAGGCATAATTAATGACTTGTCAAACCTCCTCNACAAAAACTATGGTACAACTATGGCTGGTTTAAGGGCAATTGGATATGACTTTGACTATGATGAATATCACAGCCTCACAGTTAACAGTTTTGTTCATGGGAGATTACCTTATGAGAACTTGAAACCAGACCCAGTTCTGAGGAACCTCTTGCTGAGCCTGCCATATAGGAAACTAATATTCACAAACGCAGACAAAGTCCTTGCAGTTAAGGCACTTAGCAGGCTTGGATTAGAAGNCTGCTTTGAAGGAATTATATGCTTTGAGACCCTTAATCCCATCCACAAGAGCACTGTTTCTGATGATGAAGATGACATTGAGTTTGTGGGTTCAAGCTACACAACCACAAGTAATAACAGTGCTGCTAGCAGTTGTAACTCCCAAATCTTTGACATCATTGGCCATTTTGCTCAACCCAATCCCAGCACAGTGGGTACATCTCAGAGAATTAAAGGTGCAGATTATGCCTTGGAGAGCATCCACAACCTTAGGGAGGCAGTGCCTGAATTATGGGAAGCTGACATAAAATCAGAAGTTGCTTATCCTGGAAAGCTTGCTGTGGAGACATCTGTGACTGCTTAGGATTAATTATTTAATTACAAGGAGGATCCATAATCATTAATGGGAGAAAGAAAAAGATTTAAAATTCAAAAAAAAATTGAAAATAAAAAGATAAGCCCATTGGGAATTCCCCTTGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01258	55222	58837	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001258s00037325.1	PF13419.1	HAD_2	11	148	1.40E-07
Glyur001258s00037325.2	PF13419.1	HAD_2	11	148	1.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.715
SRR1783600	control	46.911
SRR1783602	moderate drought stress	54.450
SRR1811619	moderate drought stress	53.598

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.125
DRR006520	Root Summer glycyrrhizin high producing strain	25.039
DRR006521	Root Winter glycyrrhizin high producing strain	2.110
DRR006522	Root Winter glycyrrhizin high producing strain	2.101
DRR006523	Root Summer glycyrrhizin low producing strain	13.894
DRR006524	Root Summer glycyrrhizin low producing strain	13.149
DRR006525	Leaf Summer glycyrrhizin high producing strain	69.614
DRR006526	Leaf Summer glycyrrhizin high producing strain	68.660

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.647
SRR2868004	Drought Stress (root)	41.472
SRR2967015	Control (root)	32.756

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	120.609
SRR9715740	Leaf	124.389
SRR9715741	Leaf	93.708
SRR9715739	Root	5.002
SRR9715742	Root	13.541
SRR9715743	Root	13.345

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.215
SRR8749029	MeJA induced 9h	0.063
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.051
SRR8749032	Uninduced	0.020

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.690
SRR8400027	Control - Root	19.964