Gene detail information of Glyur001257s00037433 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02060.1 | 3.00E-165 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004510607.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|O81908|PPR2_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g02060, chloroplastic (Precursor) |
| trEMBL | tr|I1LU33|I1LU33_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G31790.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01257 | 43284 | 45320 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001257s00037433.1 | PF13041.1 | PPR_2 | 93 | 133 | 1.20E-08 |
| Glyur001257s00037433.1 | PF13041.1 | PPR_2 | 159 | 208 | 1.50E-17 |
| Glyur001257s00037433.1 | PF13041.1 | PPR_2 | 231 | 280 | 6.90E-20 |
| Glyur001257s00037433.1 | PF12854.2 | PPR_1 | 300 | 325 | 1.20E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.188 |
| SRR1783600 | control | 2.252 |
| SRR1783602 | moderate drought stress | 1.841 |
| SRR1811619 | moderate drought stress | 1.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.681 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.235 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.700 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.879 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.788 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.489 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.093 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.359 |
| SRR2868004 | Drought Stress (root) | 2.950 |
| SRR2967015 | Control (root) | 2.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.526 |
| SRR9715740 | Leaf | 0.998 |
| SRR9715741 | Leaf | 1.363 |
| SRR9715739 | Root | 0.371 |
| SRR9715742 | Root | 2.889 |
| SRR9715743 | Root | 2.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.645 |
| SRR8749028 | MeJA induced 9h | 1.600 |
| SRR8749029 | MeJA induced 9h | 0.554 |
| SRR8749030 | Uninduced | 0.383 |
| SRR8749031 | Uninduced | 0.061 |
| SRR8749032 | Uninduced | 0.083 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.744 |
| SRR8400027 | Control - Root | 4.637 |