Gene detail information of Glyur001257s00037432 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44980.2 | 4.00E-100 | SNF2 domain-containing protein / helicase domain-containing protein |
| NR | KEH22309.1 | 0 | chromodomain helicase-DNA-binding-like protein [Medicago truncatula] |
| COG | YP_001181346.1 | 2.00E-06 | helicase domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|Q8RXS6|INO80_ARATH | 2.00E-08 | DNA helicase INO80 |
| trEMBL | tr|A0A072TXT9|A0A072TXT9_MEDTR | 0 | Chromodomain helicase-DNA-binding-like protein {ECO:0000313|EMBL:KEH22309.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01257 | 780 | 7061 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.042 |
| SRR1783600 | control | 1.995 |
| SRR1783602 | moderate drought stress | 3.238 |
| SRR1811619 | moderate drought stress | 3.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.237 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.714 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.642 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.792 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.102 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.857 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.694 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.339 |
| SRR2868004 | Drought Stress (root) | 7.126 |
| SRR2967015 | Control (root) | 7.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.569 |
| SRR9715740 | Leaf | 3.452 |
| SRR9715741 | Leaf | 3.353 |
| SRR9715739 | Root | 0.285 |
| SRR9715742 | Root | 2.171 |
| SRR9715743 | Root | 1.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.761 |
| SRR8749028 | MeJA induced 9h | 6.880 |
| SRR8749029 | MeJA induced 9h | 5.545 |
| SRR8749030 | Uninduced | 4.719 |
| SRR8749031 | Uninduced | 4.116 |
| SRR8749032 | Uninduced | 3.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.726 |
| SRR8400027 | Control - Root | 6.076 |