Gene detail information of Glyur001254s00028559 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15660.1 | 6.00E-29 | centromere protein C |
| NR | XP_004511206.1 | 0 | PREDICTED: uncharacterized protein LOC101510656, partial [Cicer arietinum] |
| trEMBL | tr|Q66LI1|Q66LI1_MEDTR | 0 | Centromere C-like protein {ECO:0000313|EMBL:KEH19741.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01254 | 45268 | 64392 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.609 |
| SRR1783600 | control | 2.735 |
| SRR1783602 | moderate drought stress | 2.952 |
| SRR1811619 | moderate drought stress | 3.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.157 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.295 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.182 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.241 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.132 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.058 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.548 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.041 |
| SRR2868004 | Drought Stress (root) | 3.981 |
| SRR2967015 | Control (root) | 4.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.033 |
| SRR9715740 | Leaf | 0.504 |
| SRR9715741 | Leaf | 0.642 |
| SRR9715739 | Root | 0.402 |
| SRR9715742 | Root | 1.998 |
| SRR9715743 | Root | 1.596 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.257 |
| SRR8749028 | MeJA induced 9h | 10.894 |
| SRR8749029 | MeJA induced 9h | 12.622 |
| SRR8749030 | Uninduced | 3.488 |
| SRR8749031 | Uninduced | 2.882 |
| SRR8749032 | Uninduced | 3.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.616 |
| SRR8400027 | Control - Root | 7.762 |