Gene detail

Gene detail information of Glyur001254s00028555

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42920.1	5.00E-143	Pentatricopeptide repeat (PPR-like) superfamily protein
NR	XP_003545143.1	0	PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like [Glycine max]
Swissprot	tr\|Q9SJG6\|PP200_ARATH	0	Pentatricopeptide repeat-containing protein At2g42920, chloroplastic (Precursor)
trEMBL	tr\|G7K3C5\|G7K3C5_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AET00403.1}

Sequence

Transcript Sequence

>Glyur001254s00028555.1
ATGCCAACTCTTTGTTCTTCACTTTCTCAATCTTCACCACTGCCACCCTCCATATCCAAGTTCATCTCTGACCAACCATGCCTCACCATGCTCCACAAACACTGCACCACCATGAAAGACTTTCAAAAGATCCATGCCCACATCATCAAAACTGGCCTTGCTCTTGACCCCATTGCTGCAAGCCGTGTCCTCACCTTCTGTGCCTCTCCATCTGGTGACATCAACTATGCTTACATGGTGTTCACCCGTATGCCTAGACCAGTTAGTCTCTATTCTTGGAACACCATCATTAGAGCCTTCTCTAGGAGCTCAACCCCACATTTTGCTATATCACTCTTTGTTGACATGTTGCAGTGTGAGCCCAAGGTTCAACCCCAACGGTTGACTTACCCTTCTGTTTTCAAAGCCTATGCTCAACTGGGGGCTGGCCAAGATGGTGCTCAGCTTCATGGGAGAGTTTTGAAATTGGGTCTTCAAAAGGACCAGTTTATTAGTAACACCATCATATACATGTATGCTGATAGTGGTCTATTGAGTGAAGCTAGAAGGTGTGGGGAAATTGATGAATCTAGGAGGTTGTTTGATGAAATGCCTACAAGAACAGCAGTTACTTGGAACTCAATGATTAAGGAAGAGGTTGTGCCAAGTGAGTTCACAATGGTGAGCCTGTTGAATGCTTGTGCTCACTTAGGAGCACTTCAACATGGGAAATGGGTTCATGATTATGTGAAAAGGAATCATTTTGAGTTGAATGTCATTGTTCTCACAGCAATAATTGACATGTACTGCAAGTGTGGGTCTATTGGAAATGCTATTGAAGTGTTTGAGAAATACCCCAAAAGAGGGCTATCAAGTTGGAACTCCATTATAATAGGGCTAGCCATGAATGGTCATGAAAGAGAAGCAATTGAGTTCTTCTCCAAGCTTGAATCTTCAAAATTGAAGCCAGACCATCATTTGGGAGCAGTTGATAAAGCAAGGGACTATTTTGCCCTGATGATGAATAAGTATAAGATTGAACCATCAATAAAACACTACACCTGCATGGTTGATGTGCTAGGTCAAGCTGCACTCCTAGAAGAAGCAGAAGAACTCATAAAGGGTATGCCTACAAAGCCAGATGCTATTATATGGGGATCTTTGCTCTCTTCTTGTAGGAAGCATTGGAATGCACGGATTGCAAAACGGGCTGCACAAAGAGTTCATGAGCTAAATCCAAGTGATGCCGGTGGTTATGTGCTTATGTCTAATGTTCATGCTGAATCCAACAAATTTGAAGAGGCAATGGAGCAAAGGCTTTTGATGAAGAAAAGCTTGACAGAGAAAGAACCAGGATGCAGTTCAATTGAATTATATGGAGAGGTCCATGAGTTTCTAGCTGGGGGAAGGCTACATCCTAAGACTCAAGAGATCTACTCTTTATTGAATGATTCCAGTTTTGCACTTCAAGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01254	18496	20383	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001254s00028555.1	PF01535.15	PPR	91	118	0.0056
Glyur001254s00028555.1	PF01535.15	PPR	255	282	0.0023
Glyur001254s00028555.1	PF01535.15	PPR	285	312	0.00063
Glyur001254s00028555.1	PF01535.15	PPR	346	370	0.024

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.058
SRR1783600	control	5.269
SRR1783602	moderate drought stress	4.176
SRR1811619	moderate drought stress	3.896

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.461
DRR006520	Root Summer glycyrrhizin high producing strain	3.407
DRR006521	Root Winter glycyrrhizin high producing strain	0.578
DRR006522	Root Winter glycyrrhizin high producing strain	0.619
DRR006523	Root Summer glycyrrhizin low producing strain	1.747
DRR006524	Root Summer glycyrrhizin low producing strain	1.828
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.984
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.388

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.946
SRR2868004	Drought Stress (root)	3.700
SRR2967015	Control (root)	3.059

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.191
SRR9715740	Leaf	7.950
SRR9715741	Leaf	4.615
SRR9715739	Root	0.139
SRR9715742	Root	2.189
SRR9715743	Root	2.065

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.968
SRR8749028	MeJA induced 9h	1.311
SRR8749029	MeJA induced 9h	0.819
SRR8749030	Uninduced	0.083
SRR8749031	Uninduced	0.046
SRR8749032	Uninduced	0.121

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.800
SRR8400027	Control - Root	10.610