Gene detail information of Glyur001254s00028554 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42940.1 | 8.00E-68 | Predicted AT-hook DNA-binding family protein |
| NR | XP_003617443.1 | 5.84E-172 | hypothetical protein MTR_5g091630 [Medicago truncatula] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 4.00E-44 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|G7K3C4|G7K3C4_MEDTR | 2.00E-172 | AT hook motif DNA-binding family protein {ECO:0000313|EMBL:AET00402.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01254 | 16880 | 17629 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001254s00028554.1 | PF03479.10 | DUF296 | 72 | 187 | 3.20E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.622 |
| SRR1783600 | control | 8.577 |
| SRR1783602 | moderate drought stress | 9.293 |
| SRR1811619 | moderate drought stress | 9.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.529 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.594 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.635 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.592 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.489 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.541 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.230 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.324 |
| SRR2868004 | Drought Stress (root) | 8.270 |
| SRR2967015 | Control (root) | 4.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.506 |
| SRR9715740 | Leaf | 21.308 |
| SRR9715741 | Leaf | 8.787 |
| SRR9715739 | Root | 0.331 |
| SRR9715742 | Root | 1.326 |
| SRR9715743 | Root | 2.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.957 |
| SRR8749028 | MeJA induced 9h | 1.448 |
| SRR8749029 | MeJA induced 9h | 3.507 |
| SRR8749030 | Uninduced | 0.616 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.564 |
| SRR8400027 | Control - Root | 15.426 |