Gene detail

Gene detail information of Glyur001253s00030148

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47340.3	6.00E-50	glutamine-dependent asparagine synthase 1
NR	ABU95104.1	9.24E-60	asparagine synthetase [Phaseolus vulgaris]
COG	YP_006284075.1	7.00E-46	Asparagine synthetase B [Pectobacterium sp. SCC3193]
Swissprot	tr\|P49092\|ASNS1_LOTJA	1.00E-59	Asparagine synthetase [glutamine-hydrolyzing] 1
trEMBL	tr\|A9XS73\|A9XS73_PHAVU	3.00E-60	Asparagine synthetase {ECO:0000256\|PIRNR:PIRNR001589}

Sequence

Transcript Sequence

>Glyur001253s00030148.1
ATGCACGAGCACTGGCCCAAGCACTACGGTTTTAGCGGCGATGGTAACTTGGAGTTCACCCATCGTTGGCCATCGTTCCCTATTTTGGAAGATGACGCCACCGACCCCAACATGGATTTGCCAATCATAGACACCCGCCCATATGACCCAGGCCCGCATGAGTCACCAAACCCACCCGCCGAGACAAAGCAACCATGCTATCGGCAGATTCCAGATTTTATGAGAAAAGGGTGTCCACTCGTGTCCTCGCCTCGAACCATGACTAATTGCGTGATTTTGTCCATTACTCCAGCAAATCAAGATATAGCGAAATCTGATCTCATAAAGGTTTCCAGACAAGTTGACCCTTCAAGTGCAAGAACATTTGGCATGTCGGCAAATGCTTTGGATGTCCTTGAGGGAAGATCACATCGATTTCACAACCATTGGGTCGGTATTGTGAACCATTCTCAGGCAGATATTAATAGGAATATAAATATGATTGCTGCTCAGCAAGGGGAGCATAAATGTTTTACCCCCTTTCCTGACTACGCACACTTGGCCAACCGAATGAGCTTGGCATATCTCACAAGGGCAATGGTTCAGAAAAGGGACAAGCAGAATAGTGACAAAGCAAGGATATATGATTGGGTCCAAGTAAGGCAATATGGAATTATGTATTATTTAGCACTTGGTGACCAGAGGATTGTTGACCAAAATTTCATCATTAAGCCTAAAGCTAAGTTTGAGGGTGGAAGAATGACATTGGGTGAATTGTTAGCTCTTGGGTACATTGTCATGAAGCTGTCTAGCAAATTTGATAATGCTCTTATTAACACTTTGGTTCTTTTACGCTACCTAGTAATTGGTTCCCTGCTTCCTAAATTCCGCTATGACATTGGAGATTCTTATTCGTTGGATTACCTCATAGATGGCATTTTTCCATTATTGAGAAAGCACATTGAGCCAAATTGTCATCATGCACAGATCCAAATTAACATTAGCTATGTGTCATCATTTAGAGAGGCAATTTACAAGGCTAAATGCAGAAACAAGTTTTCAGATGGACATCCAGGTTCTTCATTCCAAGGCAATAAAGCCCAAACAGGTCTCGAGAGCTCACATGTTCTGAAGGCTGCAAATGAAGTTGTTGACTACGTAGGGACTGTCCTCCATGAGTTCCACTTTACTGTGCAGATTGGTATAGGTGCTATTGAGGATGTTATATACCATATTGAAACATATGATTTGACTACAACTAGAGCAAGCACACCTATTTTTCTTATGTCTCAGAAGATTAAATCACTTGGAGTCAAATGGGTAATATTTGGAGAAGGATCTGATGTGATCTTTGGTGGGTATATGTACTTCCACAAGGTTCCCAACAAGGAAGAATTTCACAAAGAAGCATGCCGCAAGATCAAAGCACTCCACCAATATGTTTACTTGCAAGAAAATAAGTCAACATTTCCTTGGAATCTAGAAGCCCGAGAACCATTTTTTTGGACAAGGGGTTCACCAATTTGTTGGGTTCAAGAGCCAACAAGGGTAACTTTGTGCTCCAAAACTAAGAACTTGGGACCTAGGTCTGATTGGAAGGTTTTATGTAGCAGCTTAGCAGCACGCTATGATCTTGAGGACAAGATCAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01253	64500	66903	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01953	asnB, ASNS	EC:6.3.5.4	Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

biological_process
GO:0006529 asparagine biosynthetic process

molecular_function

GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001253s00030148.1	PF01031.15	Dynamin_M	128	193	1.00E-09
Glyur001253s00030148.1	PF00733.16	Asn_synthase	364	493	3.60E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.722
SRR1783600	control	6.786
SRR1783602	moderate drought stress	1.593
SRR1811619	moderate drought stress	1.772

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.962
DRR006520	Root Summer glycyrrhizin high producing strain	2.104
DRR006521	Root Winter glycyrrhizin high producing strain	1.232
DRR006522	Root Winter glycyrrhizin high producing strain	1.332
DRR006523	Root Summer glycyrrhizin low producing strain	1.034
DRR006524	Root Summer glycyrrhizin low producing strain	0.746
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.140
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.401

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.872
SRR2868004	Drought Stress (root)	0.488
SRR2967015	Control (root)	0.740

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.547
SRR9715740	Leaf	1.782
SRR9715741	Leaf	0.586
SRR9715739	Root	0.796
SRR9715742	Root	0.736
SRR9715743	Root	0.856

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.325
SRR8400027	Control - Root	2.774