Gene detail information of Glyur001252s00030517 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28050.1 | 2.00E-91 | nodulin MtN21 /EamA-like transporter family protein |
| NR | NP_001239940.1 | 0 | uncharacterized protein LOC100814137 [Glycine max] |
| Swissprot | tr|Q94JU2|WTR18_ARATH | 8.00E-129 | WAT1-related protein At3g28050 |
| trEMBL | tr|C6TGA7|C6TGA7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G22060.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01252 | 63565 | 70404 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001252s00030517.1 | PF00892.15 | EamA | 25 | 153 | 2.90E-07 |
| Glyur001252s00030517.2 | PF00892.15 | EamA | 25 | 153 | 2.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.257 |
| SRR1783600 | control | 24.237 |
| SRR1783602 | moderate drought stress | 31.892 |
| SRR1811619 | moderate drought stress | 31.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.054 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.847 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.917 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.802 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 62.087 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 61.960 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.999 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.124 |
| SRR2868004 | Drought Stress (root) | 25.614 |
| SRR2967015 | Control (root) | 24.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.822 |
| SRR9715740 | Leaf | 6.487 |
| SRR9715741 | Leaf | 8.465 |
| SRR9715739 | Root | 5.629 |
| SRR9715742 | Root | 9.749 |
| SRR9715743 | Root | 9.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.722 |
| SRR8749028 | MeJA induced 9h | 4.378 |
| SRR8749029 | MeJA induced 9h | 1.901 |
| SRR8749030 | Uninduced | 0.955 |
| SRR8749031 | Uninduced | 0.784 |
| SRR8749032 | Uninduced | 1.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.588 |
| SRR8400027 | Control - Root | 25.635 |