Gene detail information of Glyur001251s00033105 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14080.2 | 4.00E-39 | Small nuclear ribonucleoprotein family protein |
| NR | XP_003595339.1 | 3.30E-69 | U6 snRNA-associated Sm-like protein LSm1 [Medicago truncatula] |
| Swissprot | tr|Q8LFL8|LSM1B_ARATH | 1.00E-59 | Sm-like protein LSM1B {ECO:0000305} |
| trEMBL | tr|G7IIN9|G7IIN9_MEDTR | 1.00E-69 | Small nuclear ribonucleoprotein {ECO:0000313|EMBL:AES65590.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01251 | 28246 | 33957 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001251s00033105.1 | PF01423.17 | LSM | 8 | 69 | 1.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.603 |
| SRR1783600 | control | 11.339 |
| SRR1783602 | moderate drought stress | 11.617 |
| SRR1811619 | moderate drought stress | 11.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.179 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.976 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.868 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.671 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.165 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.828 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.894 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.440 |
| SRR2868004 | Drought Stress (root) | 22.172 |
| SRR2967015 | Control (root) | 27.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.972 |
| SRR9715740 | Leaf | 39.046 |
| SRR9715741 | Leaf | 26.830 |
| SRR9715739 | Root | 12.278 |
| SRR9715742 | Root | 14.645 |
| SRR9715743 | Root | 16.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.689 |
| SRR8749028 | MeJA induced 9h | 9.694 |
| SRR8749029 | MeJA induced 9h | 10.462 |
| SRR8749030 | Uninduced | 7.056 |
| SRR8749031 | Uninduced | 2.099 |
| SRR8749032 | Uninduced | 1.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.668 |
| SRR8400027 | Control - Root | 19.038 |