Gene detail

Gene detail information of Glyur001251s00033104.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20690.1	3.00E-120	Leucine-rich repeat protein kinase family protein
NR	XP_004488098.1	0	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At5g20690-like [Cicer arietinum]
COG	YP_004429344.1	1.00E-14	leucine-rich repeat-containing protein [Krokinobacter sp. 4H-3-7-5]
Swissprot	tr\|Q3E991\|Y5269_ARATH	0	Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690 (Precursor)
trEMBL	tr\|G7IIP0\|G7IIP0_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES65591.1}

Sequence

Transcript Sequence

>Glyur001251s00033104.1
TGATAATATGAGATTGACCTATTTGGATGGAGCAAGTAAGCAAACCAGTCCATCCATGGCAGCCACCACACCAGACCACAACACAACCCATTGGCACCGTGAAATGCATGTGACTGGGTCAAGGCAACGTAAGCTTACACCAACTGTATATCCTCTCCCCACTCACCACCACCCTATAATTATCATAACAAACCCAACGAGTCACGCAGCAAAGCAAACCTCTATTCTTAGAATCCAACAGCAATTTGTGGCAAAACACCATCTCCCCCATNATCCCCTCTCCCTCTCTCTTCCAACCCACACCCAAACACAAACCCAAAACAAACAAAAAAACAACAACACCACAACACACCAACAACAACATGAGTAATCATTTCAAGAAAAAGAAAACCAAACAAAAAAAAGATCAAACCTTAAGGCGCAAGCAGCAATGTTCGCCGCTGCTTCCGTTCACGTGTTCCTCCTCTCGCTCTTCCTTTCTCTCTCTTTTTCCACCCAATCGGAGACGCAATCCCTCCTCAGGCTAAAACAATCCCTCACAAACTCAGACTCATCGCTATCCTCATGGATCCCAAACGTGTCCCCATGTTCCGGCACGTGGGTCGGAGTTATCTGCTTCAACAACATCATCACCGGTCTCCACCTCTCCGACCTCAACCTCTCCGGCACAATCGACGTCGACGCCCTCGCCGAGATTCGAGGCCTACGTACCCTCAGCTTCGTCAACAACTCCTTCTCCGGCGAAATCCCAAGCTTCAACAAGCTCGGAACAATCAAATCCCTCCTCTTAACCCAAAACTCCTTCTCCGGCACAATCCCACAAGACTTCTTCAAACAATTATCCTCCCTGAAGAAAATCTGGCTCGCCGGAAACAAATTCTCCGGCGAAATCCCTATCTCCTTAACCGAACTCGACCTCCTTAGAGAACTCCACCTCGAAGGAAACCAATTCTCAGGAAAAATCCCAAATCTCAAACAAGAGATAAAATCCTTCGATGTTTCAAACAACAACCTCGAAGGCCCAATCCCTGAAACCCTAGCGAGGTTCGGTGCGGCGTCGTTTTCGGGAAACGAACGTCTCTGCGGGAAGCCGTTAGACAAACCCTGCAACGGCTCCTCTTCTGATTCTGGTTCTTATTACTCGCTCCCGTCGGGCGGTTATTCTAANGGCGTGAGCGGTTACGGTTCGGGTTGGGCGGTTAAGGTTATCGTGATTCTCGCACTAGCGGCACTCGCGGCGGTTATGTTTCTGTTTGTGAAATGGAGGCAACGGCGTGATGACGATTTCAGCGTGGTGAGTAGGGATAGTAGCGTGGATAATGACGTGGCAGGGAAACAGGTTCTGGTTCCGATAAGTAGAGCCTCGTCATCAAGTGCCTCAGGTTCGGAACGGGTTGGGAGCAGAAAAGGATTAGGTTCGGTTAGTGAGGTGAATAATAAAAAGGGAGGTTCGGGAATGAAGGGTGGGATGGGGGATTTGGTGATGGTGAATGAGGAGAAGGGTGTGTTTGGGATGCAGGATTTGATGAAAGCTGCGGCGGAGGTATTGGGGAGTGGTGGGTTGGGTTCGGCTTATAAGGCAGCGATGGGGAATGGGATTTGTGTTGTGGTGAAGAGGGTGAGGGAGATGAATAAGATGGGGAAGGATGTGTTTGATGCTGAGATGAGGCAGTTTGGGAGGATTAGGAATAACAATGTTTTGACTCCTTTGGCTTATCATTACCGGAGGGAGGAGAAGCTCTTCGTCACTGAGTATATGCCCCGGGGAAGCTTGTCNTATGTCTTGCACGGTGATAGAGGAACATCCCATTCTGATTTGAATTGGCCTACCCGTTTGAAGATTGCCAAGGGAATTGCAAGAGGGTTGAGCTTCCTTTACACTGAGTTTTCCACCTACGACCTACCCCATGGAAACCTCAAGTCTAGCAATGTTCTACTAAGTGAGGATTACGAGCCTCTCTTAAGTGACTATGCTTTCCAACCACTAATGAACCCCCAAGTTGCAGTGCAGACAATGTTTGCCTACAAGACCCCAGATTACATACAGAACCAGAAAGTCTCACAGAAGACTGATGTATATTGCCTCGGAATCATCATCCTTGAGATCATCACTGGCAAGTTCCCTTCTCAGTATCACAGCAATGGAAAAGGTGGGACCGATGTCGTGCAATGGGTACTCGCAGCAATCTCTGAGAGAAGAGAGGCAGAACTGATTGATCAAGAGTTGGTAAAGAACCACGCGAATTCGCACAATCAGATGCTGCAGCTTCTACAAATTGGGGCTGCTTGCACAGAGAACAACCCGGAACGAAGACTACACATGAAGGAAGCCATTAGAAGGATAGAGGAGGTACAGGTCTAAAAGATTGTGTCAATAAGCTAGCTATCTTAGTTCAAAAAAAGTTTCTTTTGTAGGTGAGAATTGCATGAAGGCCTTGGAAATGTTGCAGCTCAGAATCTTAAGGGCATGTTTGGTTTTCAGTTGTAAACGTATGTTTGGGTCTAGAAATACGTTTGCCCAAAAGGAACTCTACAATTACTTTTGGTTCAAATATACTTTTACAATCTTTCAACTGAAAATCAAANATGCACTAAATCCAATGCTTAACCATTGTCATGAATGAGATCTAGTAAGCAATGATTTTGTGCAAGAGAAACACACACAGGTGACAGTACAGAGGAGAATGGAAGAAGAGTGGGAAAAAAAAAGGTAGAAAGGGAGAAAGATTGGATAGTTTCATGAAGCAGTTCGGTTTATGAGGAAAGGGTGATATATATTAATTGATCAACATGATGAAACAACAACGGCTTAGGAGAGCTACAATAGAGAAGTGTTTTTATGTTCATATCTCTTGATCTCAGTCCTTCAATTATGAAAACTGAAACCATATATGTTTCAAGAGGCGCTGAAGCTTGGAGTGTTTCTCATGTTTTTGTCCTTTCGAAAGGAAAGTCCACAGCTTAGCCTCTTCTTTATATGCTGATATTGGCCCTTGCAAAGTATATGTAATNCTTATTAATAAAAACCATTTTTAGACAGCATTCCTTAAATTTGTAAAGACTTAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01251	23126	27041	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001251s00033104.1	PF08263.7	LRRNT_2	23	62	1.20E-09
Glyur001251s00033104.1	PF13855.1	LRR_8	115	173	6.80E-08
Glyur001251s00033104.1	PF00069.20	Pkinase	371	636	1.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.335
SRR1783600	control	9.203
SRR1783602	moderate drought stress	11.809
SRR1811619	moderate drought stress	11.819

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.185
DRR006520	Root Summer glycyrrhizin high producing strain	5.961
DRR006521	Root Winter glycyrrhizin high producing strain	3.903
DRR006522	Root Winter glycyrrhizin high producing strain	3.804
DRR006523	Root Summer glycyrrhizin low producing strain	9.530
DRR006524	Root Summer glycyrrhizin low producing strain	9.458
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.575
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.422

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.272
SRR2868004	Drought Stress (root)	10.730
SRR2967015	Control (root)	10.836

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.817
SRR9715740	Leaf	7.744
SRR9715741	Leaf	7.162
SRR9715739	Root	2.346
SRR9715742	Root	4.233
SRR9715743	Root	4.271

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.953
SRR8749028	MeJA induced 9h	7.278
SRR8749029	MeJA induced 9h	5.906
SRR8749030	Uninduced	12.910
SRR8749031	Uninduced	14.285
SRR8749032	Uninduced	9.091

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.952
SRR8400027	Control - Root	9.514