Gene detail information of Glyur001251s00033102 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19150.1 | 1.00E-76 | photosystem I light harvesting complex gene 6 |
| NR | AFK42470.1 | 1.68E-111 | unknown [Lotus japonicus] |
| Swissprot | tr|P10708|CB12_SOLLC | 3.00E-73 | Chlorophyll a-b binding protein 7, chloroplastic (Precursor) |
| trEMBL | tr|I3SQC8|I3SQC8_LOTJA | 6.00E-112 | Uncharacterized protein {ECO:0000313|EMBL:AFK42470.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01251 | 18637 | 21644 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001251s00033102.1 | PF00504.16 | Chloroa_b-bind | 1 | 132 | 3.00E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.202 |
| SRR1783600 | control | 0.142 |
| SRR1783602 | moderate drought stress | 0.141 |
| SRR1811619 | moderate drought stress | 0.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.065 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.096 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 100.169 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 98.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.121 |
| SRR2868004 | Drought Stress (root) | 0.281 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 73.628 |
| SRR9715740 | Leaf | 120.702 |
| SRR9715741 | Leaf | 46.496 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.351 |
| SRR9715743 | Root | 0.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.054 |
| SRR8749032 | Uninduced | 0.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.572 |
| SRR8400027 | Control - Root | 0.783 |