Gene detail information of Glyur001251s00033101 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G42950.1 | 0 | Pectin lyase-like superfamily protein |
| NR | AFK48190.1 | 0 | unknown [Lotus japonicus] |
| COG | YP_001179193.1 | 7.00E-57 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 5.00E-122 | Probable polygalacturonase |
| trEMBL | tr|I3T6P8|I3T6P8_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK48190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01251 | 1745 | 12835 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001251s00033101.1 | PF00295.12 | Glyco_hydro_28 | 168 | 447 | 2.60E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.438 |
| SRR1783600 | control | 5.477 |
| SRR1783602 | moderate drought stress | 6.219 |
| SRR1811619 | moderate drought stress | 6.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.778 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.563 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.094 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.778 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.968 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.342 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.835 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.079 |
| SRR2868004 | Drought Stress (root) | 12.066 |
| SRR2967015 | Control (root) | 14.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.632 |
| SRR9715740 | Leaf | 8.725 |
| SRR9715741 | Leaf | 7.306 |
| SRR9715739 | Root | 3.199 |
| SRR9715742 | Root | 5.983 |
| SRR9715743 | Root | 4.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.952 |
| SRR8749028 | MeJA induced 9h | 13.737 |
| SRR8749029 | MeJA induced 9h | 8.442 |
| SRR8749030 | Uninduced | 9.854 |
| SRR8749031 | Uninduced | 24.850 |
| SRR8749032 | Uninduced | 24.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.037 |
| SRR8400027 | Control - Root | 9.791 |