Gene detail

Gene detail information of Glyur001250s00032717

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G36930.2	3.00E-33	Disease resistance protein (TIR-NBS-LRR class) family
NR	XP_006599678.1	4.09E-63	PREDICTED: TMV resistance protein N-like [Glycine max]
Swissprot	tr\|Q40392\|TMVRN_NICGU	4.00E-34	TMV resistance protein N
trEMBL	tr\|K7MIV1\|K7MIV1_SOYBN	2.00E-63	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G33681.2}

Sequence

Transcript Sequence

>Glyur001250s00032717.1
GAAGTGCAGTGCCACAAGCGAGGTTTCATGGCCGGTCAACAGTCCTCCTTCACCTACGATGTGTTCCTTCTCAGCTTCTGTGGCGGCTCAGATACTGGCCACGGTACTTTCACTGAGAATCTCGTGAGAGCTCTCCATGACAGCGGAATCAACCGCACCTTTATTGTTGAATACGAGGAGCTTCTTCCTAGAGGCGACGAAGAAGAAGTACTGTCACTTGTCAAGGCCATAAAACAGTCAAAGATTGCCATTATCGTCTTCTCTAACAACGATGCCTCGTCTTCACTCCGATTGGAAGCACTTGCTTGTATCGTTGATCCTTCTGATGTATTGGCAAGGCTTGACGAAGAGGAGATGCTGCTACTCAAGGATAACAGCGAAGAGGTGAAACTGCAGAAATGGAGNAACGCTCTGTCTCATGTTGCTAACTTGTCCGGCTGGATCTTCAAACTCGGGGTTGGACATGATGAAGTCGAGTCTAATCGAAGAAGGATTGAGGAAAAGGTCNCTGATCGTGCTCCTTTGCATGTTGTGGATTACATTGTCGGATTGGAGTCTCGAATGCAAGAAGTGGGCTCGCTTATGGAGCTGGGATCTGACAGAGTCCTCATGGTTGGGATATGGGGAATGGGGGGAGNAGGTAAAACAACACTTGCTAAAGAAATTTATAATAGGATTGCGCACAAGTTTGAAGGTTTGTGTTTTCTTGAAAACGTGCGAGAAAATTCAAATAAACCCGATGGATTAATGTGCCTCCAAAATAGGCTTCTTTGGGAAACATCTGGAGAGAAAGATATTCAGCTAAGAAATGTCAATGAAGGAGTTTCAATGATAAAGTTTAGGCTCCGCCNAAAGAAAGTTCTTTTGGTCCTAGACGACGTGGACGCACTAGAGCAATTGAAGGCCTTGTCCTACGCCTATCTGACATTACTAACTCTTGTTTTTCGCACAATTTCACAGAGTGTTTCTGAAGTTTCTCCGACTTCTCAGAGTGTTCCTGGAGTTTCTCAGTCTTCTACAAGGGTTGTTGGAATTATGTTACAAAGTTCACATACGAGGGATTTTCAAGCTGAGATGGTATGGAGACTAGTTGGTCTTGTGTCAAGTGTAGTTGGCATGTCATGTCAAGCTAAGAGCCCTTGTTTCAAACGTTTAATTCGAGGATGGAACCCTTTCAAGTTCTTTCTTTATGGGGTGTTGTCCTTGGTTATTTGTGCCACCATACTATTTGCAAAGCCATCCTCGTTCTCCGTTCAGCACAAAAACTACATATGCTTTGTGGTTTTTATGATCATCTCAGTGTACTCATTCTTTTATGACAAAGCTGTGGACGGGAAACCTGAAATACTGAGCCTAGTTTCGAATATTGTGTCTGCTATGTTGTCGTTGAGCTTGTCTAAACTGGTTAAGTTTGGGTTCGAGACGGGTACGTTCTGTTATTTCCTAGGCTGCTTTACCATTCAACTGTTGACCATAAACGGGTGGCTGTTTTTTGTTGCCATATTCGTCGATTGGCGACTCTTTCTTTGGCATTTCTCTTCGGATTCCCAACCAGAGATTGATCACAGAGGTCAAACCATTCCTCTTTGGACTCCGAATAACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01250	66208	70551	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001250s00032717.1	PF01582.15	TIR	27	97	1.30E-07
Glyur001250s00032717.1	PF00931.17	NB-ARC	183	298	4.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.534
SRR1783600	control	4.444
SRR1783602	moderate drought stress	1.429
SRR1811619	moderate drought stress	1.677

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.879
DRR006520	Root Summer glycyrrhizin high producing strain	2.963
DRR006521	Root Winter glycyrrhizin high producing strain	0.007
DRR006522	Root Winter glycyrrhizin high producing strain	0.067
DRR006523	Root Summer glycyrrhizin low producing strain	0.137
DRR006524	Root Summer glycyrrhizin low producing strain	0.078
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.231
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.216

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.975
SRR2868004	Drought Stress (root)	11.008
SRR2967015	Control (root)	19.301

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.224
SRR9715740	Leaf	3.947
SRR9715741	Leaf	10.508
SRR9715739	Root	15.764
SRR9715742	Root	40.453
SRR9715743	Root	34.001

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.065
SRR8749028	MeJA induced 9h	9.074
SRR8749029	MeJA induced 9h	5.850
SRR8749030	Uninduced	2.173
SRR8749031	Uninduced	1.514
SRR8749032	Uninduced	0.718

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.408
SRR8400027	Control - Root	15.079