Gene detail

Gene detail information of Glyur001250s00032712

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47880.2	5.00E-162	eukaryotic release factor 1-1
NR	XP_006587430.1	0	PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Glycine max]
COG	YP_183652.1	1.00E-49	peptide chain release factor 1 [Thermococcus kodakarensis KOD1]
Swissprot	tr\|P35614\|ERF1Z_ARATH	0	Eukaryotic peptide chain release factor subunit 1-3
trEMBL	tr\|I1L3W8\|I1L3W8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G29600.1}

Sequence

Transcript Sequence

>Glyur001250s00032712.1
ATGGAGAAGCGTCATAACTATGTGAGGAAGACTGCCGAGCTTGCAACCCAGTTTTATATCAATCCTGCTACCAGCCAGCCCAATGTTTCCGGATTAATACTNGCTGGTTCTGCTGATTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCTCGACTTCAGGCAAAAATACTAAATGTTGTAGATGTATCTTATGGAGGGGAGAATGGGTTTAATCAGGCTATTGAACTATCTGCTGAAATTCTGTCCAATGTTAAGTTTATTCAGGAGAAAAAATTGATTGGAAAATACTTTGAGGAAATCAGTCAGGATACCGGAAAGTATGTCTTTGGTGTTGATGATACTCTAAAAGCTCTGGAGATGGGAGCTGTTGAGACACTTATTGTCTGGGAAAATCTGGATATGACTAGGTATGCNTTAAAAAATAGTACTACTGGTGAGGTTGTCATTAAGCACCTCAACAAGGAACAGGAGGCCGACCAGAGCAATTTTAGGGATCCTGGGAGCTCTGCTGATTATGAGGTTCAGGAAAAGATGTCTCTGTTGGAGTGGTTTGCAAATGAATACAAACGGTTTGGTTGCACTCTGGAGTTTGTTACCAATAAATCGCAAGAAGGTTCACAGTTTTGCAGAGGTTTTGGTGGGATAGGTGGGATCCTGCGTTACCAGCTTGATATGAGAACATTTGATGATTTGTCTGATGATGGAGGTGAAAGGAAGGTCAAAGTGCCTGCACCAGTATGGGAGGCGGTTGCACACACTGCTGTTGCTCCGCCTCCTCTTCCTCCTCGTCTGTCTGTGGTGTTGCCTGGAAAGTTTGATTGTGAATCGAGTTGCCTTGCCCTAAAAGTGCTTTCTGATAGGAGTGACTCGCTCACATGTTCTCATATCTTTCAATATCTGGCACTACGAATTTCAGCAATATTGCTGGCTACAGCTGCTCTCGTGCTATCTGCTAGCACTCAGAAAGGCAAGAACGAAATCATGCTCCCCAAAGAGCACTACCTAGCACCAATGAAGATGGCTGATGCTCATGAGACTGATAAGAACATTGAGGTGTGGAAAGTCAAGAAGCTGATCAAGGCTCTCGAGGCTGCCAGAGGAAATGGGACGTGTATGATTTCCCTTATCATGCCCACACGCGATCAAATAGCGCGTGTTACCAAGATGCTTGGCGACGAGTTTGGAACTGCCTCAAACATCAAAAGCAGGGTGAACCGGCAGTCTGTGCTTGGTGCAATCACTTCTGCTCAGCAGAGGCTTAAGCTTTATAACAAGGTTCCTCCAAATGGGCTTGTTCTGTATGCAGGCACAATTGTCACTGAAGATGGAAAGGAAAAGAAGGTGACCATTGATTTTGAGCCATTCAGACCTATCAATGCGTCTCTCTACCTTTGTGACAACAAGTTTCACTCTGAGGCTCTAAATGAGTTGTTGGAATCTGATGACAAGTTTGGATTTATTGTCATGGATGGCAGTGGCACTCTTTTTGGGACCTTGAGTGGTAATACAAGAGAGGTGCTTCATAAGTTCAGCGTGGATCTCCCAAAGAAACACGGAAGAGGAGGGCAATCAGCTCTTCGGTTTGCCCGTCTTCGCATGGAGAAGCGTCATAACTATGTGAGGAAGACTGCCGAGCTTGCAACACAATTTTATATCAATCCTGCTACCAGCCGGCCGAATGTTTCCGGATTAATACTTGCTGGTTCTGCTGATTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCCCGACTTCAGGCAAAAATACTAAACATTGTAGATGTCTCTTATGGAGGGGAGGATGGGTTTAATCAGGCTATTCTACTATCTGCTGAAATTCTTTTATTCATGAGAAACGATTGCTTGGAAAATACTTTTGAGGAAATCAACCAGGCACTGGACAAGTGTGTCGTTGGTGTTGATGATACTCTAAAGGCTCTGGAGATGGGANCTGTTGTCATTAAGCACTTAAACAAGGAACAGGAGGCCGACCAGAGCAATTTTCGTGATCCTGAGAGCTCTGCTGATTATGAGGAAAGGAAGGTCCAAATACCTGCACCAGTATGGGAGGTAGCTGCACGCGCTCCTCCTCCTCCTCCTCATCCGTCTGTGGTGTTGCACGGAAAATGCTTTTCCCCAAAAGTGCTTTCTGATTTGAGTTACTTTCTGGCTTACCCTCACATGAGTCACATCTTTGGATCTCTGGCGCCACAAATTTCAGCTACATTGCTCGCTTCAACTGGTGAAAATCTGCGATATCTTATAGAAATGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01250	21903	30716	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006415 translational termination

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0016149 translation release factor activity, codon specific

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001250s00032712.1	PF03464.10	eRF1_2	2	85	1.10E-20
Glyur001250s00032712.1	PF03465.10	eRF1_3	88	225	8.50E-37
Glyur001250s00032712.1	PF03463.10	eRF1_1	348	480	1.30E-27
Glyur001250s00032712.1	PF03464.10	eRF1_2	485	612	3.50E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.741
SRR1783600	control	17.117
SRR1783602	moderate drought stress	18.008
SRR1811619	moderate drought stress	15.398

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.716
DRR006520	Root Summer glycyrrhizin high producing strain	28.450
DRR006521	Root Winter glycyrrhizin high producing strain	61.738
DRR006522	Root Winter glycyrrhizin high producing strain	60.850
DRR006523	Root Summer glycyrrhizin low producing strain	45.487
DRR006524	Root Summer glycyrrhizin low producing strain	44.779
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.001
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.160

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.273
SRR2868004	Drought Stress (root)	10.331
SRR2967015	Control (root)	10.181

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.355
SRR9715740	Leaf	15.275
SRR9715741	Leaf	14.585
SRR9715739	Root	6.728
SRR9715742	Root	8.899
SRR9715743	Root	7.978

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.152
SRR8749028	MeJA induced 9h	21.762
SRR8749029	MeJA induced 9h	19.935
SRR8749030	Uninduced	11.759
SRR8749031	Uninduced	19.931
SRR8749032	Uninduced	21.955

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.816
SRR8400027	Control - Root	7.939