Gene detail information of Glyur001249s00034777 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38810.2 | 8.00E-120 | Calcium-binding EF-hand family protein |
| NR | XP_003537757.1 | 0 | PREDICTED: uncharacterized protein LOC100820516 [Glycine max] |
| trEMBL | tr|I1LIP5|I1LIP5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G10340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01249 | 72609 | 76667 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.595 |
| SRR1783600 | control | 1.624 |
| SRR1783602 | moderate drought stress | 6.366 |
| SRR1811619 | moderate drought stress | 6.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.108 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.719 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.035 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.955 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.677 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.482 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.433 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.701 |
| SRR2868004 | Drought Stress (root) | 17.906 |
| SRR2967015 | Control (root) | 14.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.259 |
| SRR9715740 | Leaf | 31.318 |
| SRR9715741 | Leaf | 21.709 |
| SRR9715739 | Root | 1.359 |
| SRR9715742 | Root | 5.756 |
| SRR9715743 | Root | 5.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.011 |
| SRR8749028 | MeJA induced 9h | 2.809 |
| SRR8749029 | MeJA induced 9h | 1.077 |
| SRR8749030 | Uninduced | 0.553 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.632 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.072 |
| SRR8400027 | Control - Root | 6.351 |