Gene detail information of Glyur001249s00034776 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38430.1 | 0 | rho guanyl-nucleotide exchange factor 1 |
| NR | XP_004505677.1 | 0 | PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q93ZY2|ROGF1_ARATH | 0 | Rop guanine nucleotide exchange factor 1 |
| trEMBL | tr|I1LPF7|I1LPF7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G02620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01249 | 61473 | 65266 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001249s00034776.1 | PF03759.8 | PRONE | 110 | 463 | 1.50E-165 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.883 |
| SRR1783600 | control | 25.032 |
| SRR1783602 | moderate drought stress | 15.645 |
| SRR1811619 | moderate drought stress | 15.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.118 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.035 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.142 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.015 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.492 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.706 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.612 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.343 |
| SRR2868004 | Drought Stress (root) | 18.247 |
| SRR2967015 | Control (root) | 21.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.135 |
| SRR9715740 | Leaf | 7.004 |
| SRR9715741 | Leaf | 9.410 |
| SRR9715739 | Root | 23.982 |
| SRR9715742 | Root | 23.464 |
| SRR9715743 | Root | 22.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 113.333 |
| SRR8749028 | MeJA induced 9h | 92.721 |
| SRR8749029 | MeJA induced 9h | 86.758 |
| SRR8749030 | Uninduced | 14.004 |
| SRR8749031 | Uninduced | 13.555 |
| SRR8749032 | Uninduced | 20.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.044 |
| SRR8400027 | Control - Root | 31.808 |