Gene detail information of Glyur001249s00034774 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76160.1 | 0 | SKU5 similar 5 |
| NR | KEH30611.1 | 0 | multi-copper oxidase-like protein [Medicago truncatula] |
| COG | YP_003290660.1 | 4.00E-16 | multicopper oxidase type 3 [Rhodothermus marinus DSM 4252] |
| Swissprot | tr|P29162|ASOL_TOBAC | 0 | L-ascorbate oxidase homolog (Precursor) |
| trEMBL | tr|A0A072UMJ2|A0A072UMJ2_MEDTR | 0 | Multi-copper oxidase-like protein {ECO:0000313|EMBL:KEH30611.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01249 | 52964 | 57104 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001249s00034774.1 | PF07732.10 | Cu-oxidase_3 | 42 | 155 | 3.20E-35 |
| Glyur001249s00034774.1 | PF00394.17 | Cu-oxidase | 168 | 303 | 4.60E-41 |
| Glyur001249s00034774.1 | PF07731.9 | Cu-oxidase_2 | 385 | 520 | 8.30E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.658 |
| SRR1783600 | control | 11.903 |
| SRR1783602 | moderate drought stress | 5.090 |
| SRR1811619 | moderate drought stress | 5.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.223 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.491 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.573 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.646 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 99.282 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 96.908 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.400 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.395 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 51.318 |
| SRR2868004 | Drought Stress (root) | 36.976 |
| SRR2967015 | Control (root) | 18.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.214 |
| SRR9715740 | Leaf | 12.204 |
| SRR9715741 | Leaf | 19.906 |
| SRR9715739 | Root | 9.664 |
| SRR9715742 | Root | 14.266 |
| SRR9715743 | Root | 12.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 151.123 |
| SRR8749028 | MeJA induced 9h | 255.691 |
| SRR8749029 | MeJA induced 9h | 279.356 |
| SRR8749030 | Uninduced | 182.361 |
| SRR8749031 | Uninduced | 99.427 |
| SRR8749032 | Uninduced | 66.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.778 |
| SRR8400027 | Control - Root | 17.121 |