Gene detail

Gene detail information of Glyur001249s00034773

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47450.1	3.00E-116	chloroplast signal recognition particle component (CAO)
NR	XP_004505675.1	0	PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Cicer arietinum]
COG	YP_004281685.1	5.00E-12	ankyrin [Desulfurobacterium thermolithotrophum DSM 11699]
Swissprot	tr\|O22265\|SR43C_ARATH	6.00E-143	Signal recognition particle 43 kDa protein, chloroplastic (Precursor)
trEMBL	tr\|A0A072ULN5\|A0A072ULN5_MEDTR	0	Signal recognition particle 43 kDa protein {ECO:0000313\|EMBL:KEH30612.1}

Sequence

Transcript Sequence

>Glyur001249s00034773.1
ATGGAAGCTGCTGTATTCGTCACCAAACCAGTTTCTCACCTCAAAACCAAGCTCACTCCCATTCCCAAACACCACCCATTCAATTCCCACCACTCTCTCCCTCTCCGCCACAAACCCACCCACTTCCCCGCCGTCGTCACCGCCTCACTCCAAGACCAGCAGCAAGCACCCAAGGACGTCGTCGTCGACGATGAGTCCTACGGCGAAGTNAAGGGAATCATCGGAAGCCGGGCACTCGAAGGCGGCGCCGGAATGGAGTACCTAATCGAGTGGAAAGACGGCCACGCGCCGTCGTGGGTNCCATCCGACTTCATAGCCAAGGACGTCCTCGCCGAGTACGAGACTCCCTGGTGGACCGCCGCAAGGAAGGCCGACGAATCCGCACTCAAAANCCTAATCGCCTCAAACGACGGCCGCGACATCGACGCGGTCGACTCCGACGGCCGGACGGCACTCCTCTTCGTTGCCGGNCTCGGCTCTGAGCCCTGCGTGCGTCTTCTGGCGGAGGCCGGAGCAAACCTCGACCACCGCGACAACGGCGGCGGTTTATCGGCCCTTCACATGGCGGCGGGGTACGTNAGGCCCGGCGTGGCGAAGCTGCTTCTAGAACTCGGCGCGGATCCCGAGGTAACGGACGATAACGGAAGAACGCCGTTGGATCTGGCGAGGGAGATTCTGAAAGCGACGCCGAAGGGGAACCCGATGCAATTCGGGAGGAGGATTGGACTCGAAGGTGTGGTTAGGGTTTTGGAAGGGGCAGTGTTCGAGTACGCGGAGGTGCAGGGGATTATTGAACGGAGGGGGAAGGGTGAGAACTTGGAGTACCTTGTGACGTGGAAGGACGGTGGTGCCAACGAGTGGGTGAAGGCACGTTATGTGGCGGAGGATTTGGTGAGGGATTACGAGGCTGGGCTTGAGTACGCGGTGGCGGAGGCGGTGGTTGGGAAGAGAGTTGGGGACGATGGGAAGAATGAGTTGTTGGTGAAGTGGGCTGATCTGGATGAGCCCACTTGGGAGCCCGAGGAGAATGTGGATCCTCAGCTTGTCAATGCGTTTGAACTGAGTAGTAGCNATCAGGCCCAGCCTACTAGTGATAATGGGCTTGCCACTTTTGTTTCGAGTCAGGATGGCCCAACTAGCGAGACCGCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01249	47592	48743	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009416 response to light stimulus

GO:0045038 protein import into chloroplast thylakoid membrane

cellular_component

GO:0009507 chloroplast

GO:0080085 signal recognition particle, chloroplast targeting

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001249s00034773.1	PF13857.1	Ank_5	167	222	2.70E-11
Glyur001249s00034773.1	PF00385.19	Chromo	310	353	1.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.085
SRR1783600	control	8.605
SRR1783602	moderate drought stress	12.143
SRR1811619	moderate drought stress	11.489

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.650
DRR006520	Root Summer glycyrrhizin high producing strain	12.378
DRR006521	Root Winter glycyrrhizin high producing strain	19.350
DRR006522	Root Winter glycyrrhizin high producing strain	18.949
DRR006523	Root Summer glycyrrhizin low producing strain	13.458
DRR006524	Root Summer glycyrrhizin low producing strain	12.505
DRR006525	Leaf Summer glycyrrhizin high producing strain	78.959
DRR006526	Leaf Summer glycyrrhizin high producing strain	78.292

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.429
SRR2868004	Drought Stress (root)	7.931
SRR2967015	Control (root)	8.398

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	67.600
SRR9715740	Leaf	93.407
SRR9715741	Leaf	60.996
SRR9715739	Root	35.315
SRR9715742	Root	16.835
SRR9715743	Root	19.415

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.659
SRR8749028	MeJA induced 9h	4.294
SRR8749029	MeJA induced 9h	7.458
SRR8749030	Uninduced	2.346
SRR8749031	Uninduced	0.343
SRR8749032	Uninduced	3.122

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.285
SRR8400027	Control - Root	8.097