Gene detail information of Glyur001249s00034771 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35170.1 | 4.00E-58 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | KEH30613.1 | 3.03E-173 | late embryogenesis abundant protein [Medicago truncatula] |
| trEMBL | tr|A0A072UNH6|A0A072UNH6_MEDTR | 1.00E-173 | Late embryogenesis abundant protein {ECO:0000313|EMBL:KEH30613.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01249 | 37405 | 43623 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001249s00034771.1 | PF03168.8 | LEA_2 | 198 | 302 | 1.10E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.547 |
| SRR1783600 | control | 0.585 |
| SRR1783602 | moderate drought stress | 0.926 |
| SRR1811619 | moderate drought stress | 0.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.441 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.441 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.917 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.894 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.775 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.773 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.286 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.277 |
| SRR2868004 | Drought Stress (root) | 4.994 |
| SRR2967015 | Control (root) | 4.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.965 |
| SRR9715740 | Leaf | 0.241 |
| SRR9715741 | Leaf | 0.130 |
| SRR9715739 | Root | 7.253 |
| SRR9715742 | Root | 0.279 |
| SRR9715743 | Root | 1.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 42.770 |
| SRR8749028 | MeJA induced 9h | 20.571 |
| SRR8749029 | MeJA induced 9h | 166.978 |
| SRR8749030 | Uninduced | 0.899 |
| SRR8749031 | Uninduced | 7.361 |
| SRR8749032 | Uninduced | 30.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.141 |
| SRR8400027 | Control - Root | 1.714 |