Gene detail

Gene detail information of Glyur001249s00034770

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47670.1	2.00E-95	Transmembrane amino acid transporter family protein
NR	KHN09261.1	0	Lysine histidine transporter-like 8 [Glycine soja]
Swissprot	tr\|Q9SX98\|LHTL8_ARATH	4.00E-118	Lysine histidine transporter-like 8
trEMBL	tr\|A0A072UMJ7\|A0A072UMJ7_MEDTR	0	Transmembrane amino acid transporter family protein {ECO:0000313\|EMBL:KEH30616.1}

Sequence

Transcript Sequence

>Glyur001249s00034770.1
ATGGGAGAAGTAGCTCAACAAGGTGNTGAATATTTCATACCAGAAATAGCTCTGTTACAATACTCTGATGCCACCTTCAAACCCCCACTCTCTCCTCTGTTCATACACATTCACCCTTCAAATTCCTCTGAATTATCTGAATCTGATTCCACACCCGTTTTCCAGCACCAGCAGAATCAACAACATCCAAAAGATGAGTGGCTTCCTATAACTGAATCCAGAAATGGGAATGCCTACTATGCAGTCTTCCATATTCTTAATTCCAATATTGGATTTCAGGCTCTCATGCTTCCCGTTGCCTTTGCCACTCTTGGTTGGGCATGGGGTACTGTGTGTTTGTGTGTGGCATTTGTATGGCAGCTTTACACNATATTTCTCCTTGTTGAGCTTCATGAGACTGTCCCCGGAATTCGTCACAGCAGATACCTCTTCCTTGCAATGGCTGCCTTCGGAGGTACATGTGTGATGCTTATAATTACCGGTGGTGGGACCATGAAGCTGTTATTCAAGACACTTTGCGAAGACAACNACGACATTAATGGTACGATGCAATTGCATGCGTGTAACAATGCGCACTCACTGACCGGGGCTGAGTGGTTCTTGGTGTTTACCTGCGTGGCCATTCTCATCGCCCAGTTGCCAAACCTTAACTCCTTGGCTGCAGTGTCCCTCGTCGGTGCCGTTACTGCTGTTAGTTATTGCACACTCTTTTGGTCCCTCTCCGTTAAGAAGGGTAGACCCGACGTCGGTGTTTCCTANACTCCTTCCCTTTCGACGCAAGACTCCACAGTACTGGCAAAGATCGGTGATATTCTGAACGCCGTTGGAATCATTGTGCTGGCCTTCAGAGGTCACAATGTTTTGCTCGAAATACAGGCAAGTACACATGATGGGACACTACCTTCAAATTTCAAAGANACATCCAAAGAACCAATGCGCAGAGGAGTGAGCATTTCATACATACCTTCAAATGGAGGATTGTTGACAGCATTCCCACAATTCCACAGAAAACAAGNAACGAAATTCACAATGGGTGCAATCTATCTTCTGGTAATAATCCACTGTTTGAGTAGCTACCAAGTCTACGCCATGCCTGTATTCGACAACCTGGAACTAAGATACACGAGCGTGAAGAATCATAGATGTCCACGATGGGTTCGGGTATGTTTCCGTGTATTNTTCGGAGGGTTGACATTCTTCATAGCTGTCACGTTCCCTTTCCTTCCAAGCCTATCAGCACTTCTTGGTGGGTTCACCCTGGTTCCNCTCACCTATGCATACCCCTGTTTCATGTGGTTGGCCATAAAGAAACCTCGTTCGAGGGGTGCAATCTGGTGCTTCAACCTTGTACTTGGTTGCTTAGGGATGCTTCTCAGTGTTCTNTTGGTGGCTGCTGCTATTCGGACTCTTGCTGATAGAGGCTTACATGCTAACTTCTTCANACCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01249	29444	33372	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001249s00034770.1	PF01490.13	Aa_trans	75	312	1.80E-26
Glyur001249s00034770.1	PF01490.13	Aa_trans	343	467	4.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.035
SRR1783600	control	0.079
SRR1783602	moderate drought stress	0.078
SRR1811619	moderate drought stress	0.095

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.061
DRR006524	Root Summer glycyrrhizin low producing strain	0.119
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.945
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.001

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.136
SRR2868004	Drought Stress (root)	0.301
SRR2967015	Control (root)	0.443

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.908
SRR9715740	Leaf	0.525
SRR9715741	Leaf	10.903
SRR9715739	Root	0.302
SRR9715742	Root	0.703
SRR9715743	Root	0.434

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.148
SRR8749028	MeJA induced 9h	18.299
SRR8749029	MeJA induced 9h	29.659
SRR8749030	Uninduced	18.375
SRR8749031	Uninduced	12.404
SRR8749032	Uninduced	12.889

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.065
SRR8400027	Control - Root	0.010