Gene detail

Gene detail information of Glyur001243s00035887.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69220.1	8.00E-76	Protein kinase superfamily protein
NR	XP_004490207.1	0	PREDICTED: serine/threonine-protein kinase dst1-like [Cicer arietinum]
COG	YP_004179287.1	1.00E-18	serine/threonine protein kinase [Isosphaera pallida ATCC 43644]
Swissprot	tr\|O22040\|ANP1_ARATH	2.00E-23	Mitogen-activated protein kinase kinase kinase ANP1
trEMBL	tr\|G7JY34\|G7JY34_MEDTR	0	Serine/Threonine kinase family protein {ECO:0000313\|EMBL:AES97088.1}

Sequence

Transcript Sequence

>Glyur001243s00035887.1
CTGGGGAGTGAGAGTGATAGATTCCTTCTTTATTTATAGACCAAAAAAAGATTCCTTCTCTATTCTGCGTCACCGGAAAAATGGATCGGAGCTCTTTCTCCCCGGGAACCCGTAAAACCCGACCCAAATCTGAGATATACTCCACCTTCGTGGTCCACGACGACGGCGACGACGACCGGCGGCGGAGAACCGGAATCGCGGAAACACAGGACGATCCATACGCGACAATGGTGTACAAAGACAACGGCCACGACGACGACGACGATGACGAAGACTCCTCTCTCCCTCCGCTCCTCAAGCGTCTCCCCAAGGACTTCGGTGGCGGAGCGTCGATGGACTACGACGACGACGAAGACTCCGGCGATTTCGGCACCGTGATCGTGAAGACCGATCGGAGCCGGCAGCGGGATAGGTCTTCTTCTTCCGGCATGGCTTCACCGGCGGGATCGACCTGGAAGACTCGAGGTTCTTCTCAGGCGAGTCCTCTGAACANGTTCGGCGGGTACGACGGTGACGAACACGACGGCGAGGACGACGGCGGCGGGTTTTCAACATTCGTCGTGAGGTCCGGCGAGAGAGAGTCGGTTAGTGGAACCGTGGTGCGGCGAACAGCAGGCGGCGGTGGCGTAGGTTCGACAATGGAGAGGGCGGTGGCGAGCATGCAGGGGTTGGGAGAGTTTGGATTGGGGAAGCAGAGAAAGGGAAGTGGATCCTCGCAGAACGAGGAGTGGAAGCAGCAATCGATAGCGACCAAGGTTTCGTCGAGTTCAATCCCTGAGAGTGTTACCAGAGAGGACCCTACCACCAAGTACGAATTGCTCAATGAACTTGGGAAGGGGTCCTATGGTGCTGTTTACAAAGCGAGGGATTTAAGAACCTCGGAGATGGTTGCTATCAAAGTCATATCATTATCTGAAGGGGAGGAGGGATATGAGGAAATTCGTGGCGAGATTGAGATGCTACAACAATGTAATCATCCTAATGTTGTCCGTTATCTTGGAAGCTATCAAGGAGAGGAGTATCTTTGGATAGTGATGGAATACTGTGGTGGTGGTAGTGTTGCTGATCTGATGAACGTGACTGATGAACCACTGGATGAGGGTCAAATAGCATATATCTGTAGAGAAGCACTGAAGGGACTTGATTATTTACACTCAATTTTTAAAGTCCATAGAGACATTAAAGGTGGAAATATCTTATTAACTGAACAAGGAGATGTCAAGCTAGAGGCAGAGAAGAGGGTGAACAGAAAACAGAGCAAAGCACAAACAGAACCAGAGACCTTATCAGGTCACCGGAGTCGAGCAGAAAAGGTCGCCGGAGACAGAGGAGCAGGTCGCCGGAAATGGAGGGCTTGGGTGAAGGTCAGGTGCGATGATGGACTGAGGCAGAAAAATGCAGAAAAACAGAGTGTAGAGGAAGCACAGTTGCAGGAAGCAGCAAACCAGAAAGCTCCTCGCCTGAAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01243	64854	67787	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001243s00035887.1	PF00069.20	Pkinase	244	382	2.90E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.507
SRR1783600	control	14.261
SRR1783602	moderate drought stress	14.738
SRR1811619	moderate drought stress	14.498

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.470
DRR006520	Root Summer glycyrrhizin high producing strain	13.776
DRR006521	Root Winter glycyrrhizin high producing strain	8.610
DRR006522	Root Winter glycyrrhizin high producing strain	8.386
DRR006523	Root Summer glycyrrhizin low producing strain	13.871
DRR006524	Root Summer glycyrrhizin low producing strain	13.421
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.303
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.030

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.438
SRR2868004	Drought Stress (root)	31.013
SRR2967015	Control (root)	32.919

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.167
SRR9715740	Leaf	10.837
SRR9715741	Leaf	7.320
SRR9715739	Root	7.775
SRR9715742	Root	10.308
SRR9715743	Root	8.873

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.907
SRR8749028	MeJA induced 9h	24.156
SRR8749029	MeJA induced 9h	7.887
SRR8749030	Uninduced	5.526
SRR8749031	Uninduced	5.300
SRR8749032	Uninduced	3.383

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.819
SRR8400027	Control - Root	20.593