Gene detail information of Glyur001243s00035881 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43400.1 | 0 | Uncharacterised conserved protein UCP015417, vWA |
| NR | XP_003614127.1 | 0 | hypothetical protein MTR_5g045160 [Medicago truncatula] |
| COG | YP_005096143.1 | 5.00E-51 | hypothetical protein Marpi_0401 [Marinitoga piezophila KA3] |
| trEMBL | tr|G7JY31|G7JY31_MEDTR | 0 | Plant/T31B5-30 protein {ECO:0000313|EMBL:AES97085.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01243 | 24123 | 28699 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001243s00035881.1 | PF11443.3 | DUF2828 | 4 | 568 | 1.20E-200 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.386 |
| SRR1783600 | control | 0.478 |
| SRR1783602 | moderate drought stress | 0.767 |
| SRR1811619 | moderate drought stress | 0.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.511 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.545 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.255 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.247 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.253 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.252 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.255 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.521 |
| SRR2868004 | Drought Stress (root) | 4.256 |
| SRR2967015 | Control (root) | 3.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.584 |
| SRR9715740 | Leaf | 0.175 |
| SRR9715741 | Leaf | 0.299 |
| SRR9715739 | Root | 0.384 |
| SRR9715742 | Root | 0.476 |
| SRR9715743 | Root | 0.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.711 |
| SRR8749028 | MeJA induced 9h | 30.527 |
| SRR8749029 | MeJA induced 9h | 26.682 |
| SRR8749030 | Uninduced | 0.633 |
| SRR8749031 | Uninduced | 19.978 |
| SRR8749032 | Uninduced | 21.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.647 |
| SRR8400027 | Control - Root | 0.515 |